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[172785_x_at]

Description T25G12.9 /REP_DB=WormBase Gene ID /WP=CE07546 /TR=Q22789 /GB=AAC69023.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 0      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 443
1 2 3 4 range
A 78.3
(-2.2)
P 		40.9
(-2.9)
A 		32.8
(-3)
A 		393.2
(3)
P 		360
B 150.1
(3)
P 		74.9
(-1)
P 		36.4
(-3)
A 		117.8
(1.3)
P 		114
C 99.2
(-2.7)
A 		90.6
(-2.8)
A 		79.4
(-3)
A 		475.9
(3)
P 		397
avr 109.2
(-1.7) 		68.8
(-2.6) 		49.5
(-3) 		329
(3) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 12.6
(-3)
A 		69.3
(2)
A 		75.9
(2.6)
P 		80.3
(3)
A 		63
(1.5)
P 		66.8
(1.8)
A 		68
B 40.7
(-3)
A 		125.6
(3)
P 		67.7
(-1.1)
M 		81.1
(-0.1)
P 		58.3
(-1.8)
P 		75.2
(-0.6)
M 		85
C 55.6
(-3)
A 		138.7
(3)
P 		72.5
(-1.8)
A 		73.2
(-1.7)
M 		69.8
(-2)
A 		71
(-1.9)
P 		83
avr 36.3
(-3) 		111.2
(3) 		72
(-0.1) 		78.2
(0.4) 		63.7
(-0.8) 		71
(-0.2) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 28.5
(-0.6)
P 		8.9
(-3)
A 		8.6
(-3)
A 		57.6
(3)
P 		49
B 47.9
(3)
P 		18.5
(-1.5)
P 		8.4
(-3)
A 		25.1
(-0.5)
P 		40
C 32.8
(-2.3)
A 		26.1
(-3)
A 		27.7
(-2.8)
A 		80.2
(3)
P 		54
avr 36.4
(0.3) 		17.8
(-2.6) 		14.9
(-3) 		54.3
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 2.3
(-3)
A 		24.7
(3)
A 		16.5
(0.8)
P 		20.4
(1.8)
A 		19
(1.5)
P 		16.3
(0.8)
A 		22
B 14.2
(-3)
A 		41.8
(3)
P 		16.4
(-2.5)
M 		21.5
(-1.4)
P 		23.7
(-0.9)
P 		28
(0)
M 		28
C 20.6
(-1.7)
A 		42.3
(3)
P 		18.5
(-2.2)
A 		14.7
(-3)
M 		22.6
(-1.3)
A 		23.8
(-1)
P 		28
avr 12.4
(-3) 		36.3
(3) 		17.1
(-1.8) 		18.9
(-1.4) 		21.8
(-0.6) 		22.7
(-0.4) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172785_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18023
Sequence Type Exemplar sequence
Representative Public ID T25G12.9 NCBI
Target Description T25G12.9 /REP_DB=WormBase Gene ID /WP=CE07546 /TR=Q22789 /GB=AAC69023.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000041371 ENSEMBL cdna:SNAP chromosome:CEL140:II:5812280:5815728:1 9/11 None
SNAP00000004085 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17006820:17007851:1 11/11 None
GENEFINDER00000030887 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15342998:15344924:1 11/11 None
GENEFINDER00000027888 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17250804:17252005:-1 11/11 None
SNAP00000027879 ENSEMBL cdna:SNAP chromosome:CEL140:X:17250885:17252005:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033975 7/11 Cross Hyb Matching Probes None
GENEFINDER00000034065 7/11 Cross Hyb Matching Probes None
SNAP00000044705 7/11 Cross Hyb Matching Probes None
GENEFINDER00000044711 7/11 Cross Hyb Matching Probes None
SNAP00000024348 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004199 8/11 Cross Hyb Matching Probes None
SNAP00000030820 4/11 Cross Hyb Matching Probes None
SNAP00000030821 3/11 Cross Hyb Matching Probes None
SNAP00000033055 1/11 Cross Hyb Matching Probes None
SNAP00000033056 3/11 Cross Hyb Matching Probes None
SNAP00000009758 4/11 Cross Hyb Matching Probes None
SNAP00000009759 4/11 Cross Hyb Matching Probes None
SNAP00000025763 6/11 Cross Hyb Matching Probes None
GENEFINDER00000025772 6/11 Cross Hyb Matching Probes None
SNAP00000028297 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028308 5/11 Cross Hyb Matching Probes None
SNAP00000028298 1/11 Cross Hyb Matching Probes None
GENEFINDER00000008621 1/11 Cross Hyb Matching Probes None
SNAP00000008614 3/11 Cross Hyb Matching Probes None
F28D9.3 7/11 Cross Hyb Matching Probes None
C25G4.9 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11178670-11179746(-) 6.41 98.98
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69023 Hypothetical protein T25G12.9 [Caenorhabditis elegans] 0.0
blast AAC69023 Hypothetical protein T25G12.9 [Caenorhabditis elegans] 1.0E-170
blast T32681 hypothetical protein K07C6.14 - Caenorhabditis elegans 1.0E-158
blast T32681 hypothetical protein K07C6.14 - Caenorhabditis elegans 1.0E-157
blast T32681 hypothetical protein K07C6.14 - Caenorhabditis elegans 1.0E-140
blast AAA82401 Hypothetical protein T02G5.5 [Caenorhabditis elegans] 1.0E-118
blast AAA82401 Hypothetical protein T02G5.5 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Database ID Description E-Value
scop a.4.1.Recombinase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Recombinase DNA-binding domain 3.00000003404354E-19
scop a.4.1.Recombinase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Recombinase DNA-binding domain 3.99999987306209E-19
scop a.4.1.Recombinase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Recombinase DNA-binding domain 1.0000000458137E-18
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 9.0
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 5.1E-6
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 2.5E-10
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.0E-47
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.1E-6
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-50
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 6.6E-10
Sequence
Target Sequence 
>C. ELEGANS:172785_X_AT
tgatggtttgggccgctttttcggaaaagaagaagctccccatccaatttacaagtcata
aaatgactgctgtagattatcagcaagtcttggaaaaggattcagtgaagtttttgagac
acccgtcgaaaaaaaactggcagttccaacaggacaacgccagtattcattcagccaatt
caactcgtgcctttctcagcagcaagaaaattaaactccttaaatggccagcttgttcac
cggacctcaatccgatcgaaaatatgtgggcttccctcgtgagactcgtgtacgctaatg
gaaaacagtatccgaatgttgctgctcttaaagtcggaattgaggattcatggaacgcca
tatcagctacagagatgaaaaatctggtcaattcgatgcctaatcgaatctttgaggtca
tcgccaagaatggaggtcctacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGGTTTGGGCCGCTTTTTCGGA 486 563 593 Antisense
CTCCCCATCCAATTTACAAGTCATA 57 235 628 Antisense
GGACAACGCCAGTATTCATTCAGCC 182 527 744 Antisense
CATTCAGCCAATTCAACTCGTGCCT 367 215 760 Antisense
TTAAATGGCCAGCTTGTTCACCGGA 373 681 812 Antisense
TTCACCGGACCTCAATCCGATCGAA 67 683 828 Antisense
AAATATGTGGGCTTCCCTCGTGAGA 109 117 852 Antisense
AGTATCCGAATGTTGCTGCTCTTAA 341 63 899 Antisense
AATCTGGTCAATTCGATGCCTAATC 591 169 973 Antisense
TCGAATCTTTGAGGTCATCGCCAAG 422 601 996 Antisense
ATCGCCAAGAATGGAGGTCCTACGA 415 35 1012 Antisense
Sequence Source Affymetrix Proprietary Database