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[172784_x_at]

Description R03H10.9 /REP_DB=WormBase Gene ID /WP=CE02845 /TR=Q9GYM1 /GB=AAG00005.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 20      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 463
1 2 3 4 range
A 65.4
(-2.3)
A 		26.6
(-3)
A 		44.1
(-2.7)
A 		337.1
(3)
P 		311
B 85.4
(-0.1)
A 		28.3
(-3)
A 		29.6
(-2.9)
A 		146
(3)
A 		118
C 75.9
(-2.1)
A 		3.2
(-3)
A 		25.8
(-2.7)
A 		466
(3)
P 		463
avr 75.6
(-1.9) 		19.4
(-3) 		33.2
(-2.7) 		316.4
(3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 26.4
(-3)
A 		34.5
(-2.6)
A 		152.5
(3)
P 		40.3
(-2.3)
A 		58.5
(-1.5)
A 		26.3
(-3)
A 		126
B 81.6
(3)
A 		75.6
(2.2)
A 		42.6
(-2.1)
A 		55.2
(-0.4)
A 		66.8
(1.1)
A 		35.5
(-3)
A 		46
C 25.6
(-2.4)
A 		155.3
(3)
M 		10.9
(-3)
A 		94.5
(0.5)
A 		19.7
(-2.6)
A 		23.6
(-2.5)
A 		144
avr 44.5
(-1.4) 		88.5
(3) 		68.7
(1) 		63.3
(0.5) 		48.3
(-1) 		28.5
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 23.8
(-0.5)
A 		5.8
(-3)
A 		11.5
(-2.2)
A 		49.3
(3)
P 		44
B 27.2
(2)
A 		7
(-3)
A 		6.9
(-3)
A 		31.1
(3)
A 		24
C 25.1
(-1.1)
A 		0.9
(-3)
A 		9
(-2.4)
A 		78.6
(3)
P 		78
avr 25.4
(-0.4) 		4.6
(-3) 		9.1
(-2.4) 		53
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 4.9
(-3)
A 		12.3
(-1.4)
A 		33.2
(3)
P 		10.2
(-1.9)
A 		17.6
(-0.3)
A 		6.4
(-2.7)
A 		28
B 28.4
(3)
A 		25.2
(1.9)
A 		10.3
(-3)
A 		14.6
(-1.6)
A 		27.2
(2.6)
A 		13.2
(-2)
A 		18
C 9.5
(-2.1)
A 		47.4
(3)
M 		2.8
(-3)
A 		19
(-0.8)
A 		6.4
(-2.5)
A 		7.9
(-2.3)
A 		45
avr 14.3
(-1.4) 		28.3
(3) 		15.4
(-1.1) 		14.6
(-1.3) 		17.1
(-0.5) 		9.2
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172784_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5402
Sequence Type Exemplar sequence
Representative Public ID R03H10.9 NCBI
Target Description R03H10.9 /REP_DB=WormBase Gene ID /WP=CE02845 /TR=Q9GYM1 /GB=AAG00005.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000000602 ENSEMBL cdna:SNAP chromosome:CEL140:I:14026926:14034330:1 11/11 None
SNAP00000029126 ENSEMBL cdna:SNAP chromosome:CEL140:I:10536627:10537612:-1 10/11 None
SNAP00000012809 ENSEMBL cdna:SNAP chromosome:CEL140:II:7516864:7517936:-1 11/11 None
SNAP00000013023 ENSEMBL cdna:SNAP chromosome:CEL140:II:1935755:1936827:1 11/11 None
SNAP00000016662 ENSEMBL cdna:SNAP chromosome:CEL140:II:6571434:6572506:-1 11/11 None
SNAP00000029310 ENSEMBL cdna:SNAP chromosome:CEL140:II:894483:895555:-1 11/11 None
SNAP00000029510 ENSEMBL cdna:SNAP chromosome:CEL140:II:784749:785734:1 10/11 None
SNAP00000038990 ENSEMBL cdna:SNAP chromosome:CEL140:II:12750980:12752052:1 11/11 None
SNAP00000041941 ENSEMBL cdna:SNAP chromosome:CEL140:II:4168945:4170455:1 11/11 None
SNAP00000028776 ENSEMBL cdna:SNAP chromosome:CEL140:III:12865305:12866377:-1 11/11 None
GENEFINDER00000028802 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12865305:12866377:-1 11/11 None
SNAP00000023383 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9685512:9686584:1 11/11 None
SNAP00000028980 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13224388:13225025:-1 11/11 None
GENEFINDER00000028985 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13224388:13225025:-1 11/11 None
SNAP00000030829 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15484327:15485399:-1 11/11 None
SNAP00000000584 ENSEMBL cdna:SNAP chromosome:CEL140:V:16310334:16317171:1 11/11 None
GENEFINDER00000000588 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16314882:16317335:1 11/11 None
SNAP00000008152 ENSEMBL cdna:SNAP chromosome:CEL140:V:11291541:11292613:1 11/11 None
SNAP00000014341 ENSEMBL cdna:SNAP chromosome:CEL140:V:1834429:1835494:-1 11/11 None
SNAP00000014343 ENSEMBL cdna:SNAP chromosome:CEL140:V:1836171:1837243:1 11/11 None
SNAP00000019510 ENSEMBL cdna:SNAP chromosome:CEL140:V:15909996:15911068:1 11/11 None
SNAP00000028204 ENSEMBL cdna:SNAP chromosome:CEL140:V:3250741:3252489:-1 11/11 None
SNAP00000036947 ENSEMBL cdna:SNAP chromosome:CEL140:V:10187331:10192698:-1 10/11 None
GENEFINDER00000036967 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10188724:10191575:-1 10/11 None
SNAP00000042692 ENSEMBL cdna:SNAP chromosome:CEL140:V:17808647:17809719:1 11/11 None
GENEFINDER00000042701 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17808647:17809719:1 11/11 None
SNAP00000008608 ENSEMBL cdna:SNAP chromosome:CEL140:X:11311390:11312462:-1 9/11 None
GENEFINDER00000008621 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11311390:11315496:-1 9/11 None
SNAP00000027995 ENSEMBL cdna:SNAP chromosome:CEL140:X:7017452:7018524:-1 10/11 None
T27F6.9 ENSEMBL cdna:pseudogene chromosome:CEL140:I:12489714:12490751:-1 gene:T27F6.9 9/11 A 
C48D1.6 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:13223953:13225025:-1 gene:C48D1.6 11/11 A 
T22F3.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3590334:3591399:1 gene:T22F3.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000607 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029135 6/11 Cross Hyb Matching Probes None
GENEFINDER00000032608 3/11 Cross Hyb Matching Probes None
SNAP00000032600 8/11 Cross Hyb Matching Probes None
SNAP00000006614 7/11 Cross Hyb Matching Probes None
GENEFINDER00000006656 5/11 Cross Hyb Matching Probes None
GENEFINDER00000006696 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013041 6/11 Cross Hyb Matching Probes None
GENEFINDER00000016671 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029317 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029530 6/11 Cross Hyb Matching Probes None
GENEFINDER00000039039 6/11 Cross Hyb Matching Probes None
SNAP00000015832 6/11 Cross Hyb Matching Probes None
GENEFINDER00000015847 6/11 Cross Hyb Matching Probes None
SNAP00000018800 3/11 Cross Hyb Matching Probes None
SNAP00000018801 7/11 Cross Hyb Matching Probes None
GENEFINDER00000018834 3/11 Cross Hyb Matching Probes None
GENEFINDER00000023397 6/11 Cross Hyb Matching Probes None
GENEFINDER00000030918 6/11 Cross Hyb Matching Probes None
GENEFINDER00000008164 6/11 Cross Hyb Matching Probes None
GENEFINDER00000014355 6/11 Cross Hyb Matching Probes None
GENEFINDER00000014356 6/11 Cross Hyb Matching Probes None
GENEFINDER00000019532 6/11 Cross Hyb Matching Probes None
GENEFINDER00000028233 6/11 Cross Hyb Matching Probes None
SNAP00000029491 3/11 Cross Hyb Matching Probes None
SNAP00000034226 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034238 6/11 Cross Hyb Matching Probes None
GENEFINDER00000028000 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl T27F6.9
C48D1.6
T22F3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68416 Hypothetical protein F18C5.7 [Caenorhabditis elegans] 0.0
blast F89402 protein Y94A7B.2 [imported] - Caenorhabditis elegans 0.0
blast AAB66191 Hypothetical protein T07D3.8 [Caenorhabditis elegans] 0.0
blast AAC46728 Hypothetical protein C28F5.5 [Caenorhabditis elegans] gb|AAK29917.1| Hypothetical protein Y48G9A.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003235 EMBL-EBI Nematode insulin-related peptide, beta type 7.9E-12
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 2.1E-92
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.1E-10
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 1.2E-33
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 0.0017
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 0.0017
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 4.3E-35
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 1.2E-34
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 1.2E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000000602 1 5-24
SNAP00000000584 14 20-42,70-92,105-127,156-178,492-514,534-553,566-585,605-627,651-668,717-739,746-768,788-810,817-839,1208-1230
GENEFINDER00000000588 3 350-372,387-409,422-444
Sequence
Target Sequence 
>C. ELEGANS:172784_X_AT
gaatacccacgaaaatgctcgcgctgcaaattcaacgttctccgtcgactatttggaaag
taatcaagaagtaccaaactgagaaatccgtcgctttgagaatctcgcccggcaggcctc
gagtgacaacccataggatggatcgcaacatcctccgatcagcaagagaagatccgcata
ggaccgccacggatattcaaatgattataagttctccaaatgaacctgtaccaagtaaac
gaactgttcgtcgacgtttacagcaagcaggactacacggacgaaagccagtcaagaaac
cgttcatcagtaagaaaaatcgcatggctcgagttgcgtgggcaaaagcgcatcttcgtt
ggggacgtcaggaatgggctaaacacatctggtctgacgaaagcaagttcaatttgttcg
ggagtgatggaaattcctgggtacgtcgtcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATACCCACGAAAATGCTCGCGCT 287 327 86 Antisense
TGCTCGCGCTGCAAATTCAACGTTC 335 581 101 Antisense
CAACGTTCTCCGTCGACTATTTGGA 630 181 118 Antisense
GAAATCCGTCGCTTTGAGAATCTCG 93 363 168 Antisense
GGCCTCGAGTGACAACCCATAGGAT 697 471 200 Antisense
GGACCGCCACGGATATTCAAATGAT 301 523 266 Antisense
GTTCGTCGACGTTTACAGCAAGCAG 466 441 331 Antisense
ATCGCATGGCTCGAGTTGCGTGGGC 538 35 404 Antisense
GCAAAAGCGCATCTTCGTTGGGGAC 31 317 427 Antisense
GGGCTAAACACATCTGGTCTGACGA 105 493 461 Antisense
TGGAAATTCCTGGGTACGTCGTCCT 664 547 513 Antisense
Sequence Source Affymetrix Proprietary Database