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[172783_x_at] 7TM chemoreceptor, str family

Description C01B4.1 /REP_DB=WormBase Gene ID /WP=CE20470 /TR=Q9UAU2 /GB=AAD14693.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 02      4grp_total > 20      6grp_cgc > 43      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 59.4
(-1.6)
A 		64.5
(-1.1)
P 		43.6
(-3)
A 		111.1
(3)
A 		68
B 71.3
(0.4)
A 		60.6
(-0.8)
A 		40.5
(-3)
A 		94.4
(3)
A 		54
C 82.3
(1.7)
A 		58
(-2.5)
A 		54.9
(-3)
A 		90.1
(3)
A 		35
avr 71
(-0.2) 		61
(-1.3) 		46.3
(-3) 		98.5
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 104.8
(3)
A 		54.1
(-1.3)
A 		72.4
(0.3)
A 		60.8
(-0.7)
A 		33.3
(-3)
A 		72.8
(0.3)
A 		72
B 31.8
(-1.7)
A 		80
(3)
A 		57.7
(0.8)
A 		44.7
(-0.4)
P 		41.1
(-0.8)
A 		18.3
(-3)
A 		62
C 51.6
(-0.2)
A 		90.3
(3)
A 		17.3
(-3)
A 		66.5
(1)
A 		55.7
(0.2)
A 		56
(0.2)
A 		73
avr 62.7
(0.7) 		74.8
(3) 		49.1
(-1.9) 		57.3
(-0.3) 		43.4
(-3) 		49
(-1.9) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 21.6
(3)
A 		14
(-1.5)
P 		11.4
(-3)
A 		16.3
(-0.1)
A 		10
B 22.7
(3)
A 		15
(-0.5)
A 		9.4
(-3)
A 		20.1
(1.8)
A 		13
C 27.3
(3)
A 		16.7
(-2.3)
A 		19.1
(-1.1)
A 		15.2
(-3)
A 		12
avr 23.9
(3) 		15.2
(-1.9) 		13.3
(-3) 		17.2
(-0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 19.3
(3)
A 		19.2
(2.9)
A 		15.8
(0.7)
A 		15.4
(0.5)
A 		10
(-3)
A 		17.7
(2)
A 		9
B 11.1
(-1.7)
A 		26.6
(3)
A 		14
(-0.8)
A 		11.8
(-1.5)
P 		16.7
(-0)
A 		6.8
(-3)
A 		20
C 19.1
(0.8)
A 		27.5
(3)
A 		4.4
(-3)
A 		13.4
(-0.7)
A 		18
(0.5)
A 		18.7
(0.7)
A 		23
avr 16.5
(-0.6) 		24.4
(3) 		11.4
(-3) 		13.5
(-2) 		14.9
(-1.4) 		14.4
(-1.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172783_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15377
Sequence Type Exemplar sequence
Representative Public ID C01B4.1 NCBI
Target Description C01B4.1 /REP_DB=WormBase Gene ID /WP=CE20470 /TR=Q9UAU2 /GB=AAD14693.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071288 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-257) (str-257) mRNA, complete cds. 11/11 A 
GENEFINDER00000008436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2517358:2520699:1 10/11 None
GENEFINDER00000029975 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2409079:2412420:1 10/11 None
C01B4.1 ENSEMBL cdna:known chromosome:CEL140:V:2517358:2521599:1 gene:C01B4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2409078-2413320(+) 100.0 100.0
chrV:2517357-2521599(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-257
Ensembl C01B4.1
Entrez Gene 182052 Entrez gene
SwissProt Q9UAU2 EMBL-EBI
WormBase CE38138 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14693 Seven tm receptor protein 257 [Caenorhabditis elegans] ref|NP_503689.2| Seven TM Receptor family member (str-257) [Caenorhabditis elegans] 0.0
blast AAD14693 Seven tm receptor protein 257 [Caenorhabditis elegans] ref|NP_503689.2| Seven TM Receptor family member (str-257) [Caenorhabditis elegans] 1.0E-176
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 1.0E-173
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 1.0E-167
blast NP_503659 Y19D10A.2 [Caenorhabditis elegans] gb|AAK68415.1| Hypothetical protein Y19D10A.2 [Caenorhabditis elegans] 1.0E-153
blast NP_503659 Y19D10A.2 [Caenorhabditis elegans] gb|AAK68415.1| Hypothetical protein Y19D10A.2 [Caenorhabditis elegans] 1.0E-147
blast AAD14693 Seven tm receptor protein 257 [Caenorhabditis elegans] ref|NP_503689.2| Seven TM Receptor family member (str-257) [Caenorhabditis elegans] 1.0E-136
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503689.2 7 6-28,35-57,86-108,129-151,208-230,251-273,286-308
C01B4.1 6 7-29,68-90,111-133,190-212,233-255,268-290
GENEFINDER00000008436 6 7-29,75-97,118-140,197-219,240-262,275-297
GENEFINDER00000029975 6 7-29,75-97,118-140,197-219,240-262,275-297
Sequence
Target Sequence 
>C. ELEGANS:172783_X_AT
aaatgaaaactatccaccgcttgtcaaaaacctctcaactatcaatgatctctactatgt
gggcccattgttctggcccaagtacgccaactcaacaaccgaccactttttcagttggaa
ggctgcaaggttatgcctgattgcgatgggcttaattggattttccacttcaataatggt
gttcttcggtctgaaagcatatttggtaatgaaaaacttgatgtcacagtcaacttcttg
tgacaagttcaaaagcattcagcagcaattactacttgctctaattctgcaaacttcgat
tccagtcctcttgatgcatatttctgcaaccgcgatttacctgacaatatttttgggaaa
ttctaacgagattataggagaaaccattggattgacaattgcattgtatcccgctctgaa
tccaattccaacaattttgatcgtcaaaaattatcggactgtgttgatcaatatactggc
ttatgtcaaacgtcgagtattccgacaaactgcggtgactccacttgtgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGAAAACTATCCACCGCTTGTC 281 115 441 Antisense
ACCGCTTGTCAAAAACCTCTCAACT 149 89 456 Antisense
CAATGATCTCTACTATGTGGGCCCA 410 181 483 Antisense
TTGTTCTGGCCCAAGTACGCCAACT 44 673 508 Antisense
TCAACAACCGACCACTTTTTCAGTT 683 627 532 Antisense
GGTTATGCCTGATTGCGATGGGCTT 171 505 569 Antisense
GGTGTTCTTCGGTCTGAAAGCATAT 473 499 618 Antisense
TCTGCAAACTTCGATTCCAGTCCTC 688 607 726 Antisense
TCCAGTCCTCTTGATGCATATTTCT 231 591 741 Antisense
TATTTCTGCAACCGCGATTTACCTG 422 661 759 Antisense
AAACTGCGGTGACTCCACTTGTGTT 572 125 947 Antisense
Sequence Source Affymetrix Proprietary Database