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[172780_x_at] truncated MSP

Description C25A8.1 /REP_DB=WormBase Gene ID /WP=CE08382 /TR=Q18145 /GB=AAB03181.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=truncated MSP
Cluster 6grp_total > 99      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 33.2
(-2.3)
A 		25.3
(-3)
A 		30.9
(-2.5)
A 		89.4
(3)
A 		64
B 58
(3)
A 		19.9
(-3)
A 		48.7
(1.5)
A 		28.8
(-1.6)
A 		38
C 16.4
(-3)
A 		40.5
(-0.8)
A 		46.2
(-0.3)
A 		83
(3)
A 		67
avr 35.9
(-1.9) 		28.6
(-3) 		41.9
(-0.9) 		67.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 6.6
(-3)
A 		26
(-1.8)
A 		79.1
(1.3)
A 		12.5
(-2.6)
A 		47.8
(-0.5)
A 		107.3
(3)
A 		101
B 29
(-1.9)
A 		23.5
(-2.2)
A 		11
(-3)
A 		21.8
(-2.3)
A 		105
(3)
A 		17.7
(-2.6)
A 		94
C 39.1
(-2)
A 		99.3
(0.2)
A 		11.1
(-3)
A 		45.2
(-1.8)
A 		175.1
(3)
A 		93.7
(0)
A 		164
avr 24.9
(-3) 		49.6
(-1.2) 		33.7
(-2.4) 		26.5
(-2.9) 		109.3
(3) 		72.9
(0.4) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.1
(2.2)
A 		5.5
(-3)
A 		8.1
(-0.9)
A 		13.1
(3)
A 		8
B 18.5
(3)
A 		4.9
(-3)
A 		11.3
(-0.2)
A 		6.1
(-2.5)
A 		14
C 5.4
(-3)
A 		11.6
(0.5)
A 		16.1
(3)
A 		14
(1.8)
A 		11
avr 12
(3) 		7.3
(-3) 		11.8
(2.7) 		11.1
(1.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 1.2
(-3)
A 		9.2
(-1.1)
A 		17.2
(0.9)
A 		3.2
(-2.5)
A 		14.4
(0.2)
A 		26.1
(3)
A 		25
B 10.1
(-1.9)
A 		7.8
(-2.2)
A 		2.7
(-3)
A 		5.8
(-2.5)
A 		42.6
(3)
A 		6.6
(-2.4)
A 		40
C 14.5
(-1.7)
A 		30.3
(0.1)
A 		2.8
(-3)
A 		9.1
(-2.3)
A 		56.7
(3)
A 		31.4
(0.2)
A 		54
avr 8.6
(-2.5) 		15.8
(-1.2) 		7.6
(-2.7) 		6
(-3) 		37.9
(3) 		21.4
(-0.1) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172780_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10170
Sequence Type Exemplar sequence
Representative Public ID C25A8.1 NCBI
Target Description C25A8.1 /REP_DB=WormBase Gene ID /WP=CE08382 /TR=Q18145 /GB=AAB03181.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=truncated MSP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068683 NCBI Caenorhabditis elegans C25A8.1 (C25A8.1) mRNA, complete cds. 11/11 None
C25A8.1 ENSEMBL cdna:known chromosome:CEL140:IV:7011119:7011232:1 gene:C25A8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062742 1/11 Cross Hyb Matching Probes A 
SNAP00000031244 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031253 1/11 Cross Hyb Matching Probes None
SNAP00000043994 1/11 Cross Hyb Matching Probes None
K05F1.7 1/11 Cross Hyb Matching Probes A 
C04G2.3 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7011124-7011238(+) 100.0 100.0
Public Domain and Genome References
Gene Title truncated MSP
Ensembl C25A8.1
Entrez Gene 182878 Entrez gene
SwissProt Q18145 EMBL-EBI
WormBase CE08382 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03181 Hypothetical protein C25A8.1 [Caenorhabditis elegans] ref|NP_501084.1| C25A8.1 [Caenorhabditis elegans] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:172780_X_AT
cccaatccgttccaccaggaaacatccaagcccaaacaaagagacttggagttgatgcac
catgtagtgtgctcgatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAATCCGTTCCACCAGGAAACAT 678 257 17 Antisense
AATCCGTTCCACCAGGAAACATCCA 675 167 20 Antisense
TTCCACCAGGAAACATCCAAGCCCA 413 697 26 Antisense
TCCACCAGGAAACATCCAAGCCCAA 317 587 27 Antisense
CACCAGGAAACATCCAAGCCCAAAC 509 199 29 Antisense
CAGGAAACATCCAAGCCCAAACAAA 100 207 32 Antisense
GGAAACATCCAAGCCCAAACAAAGA 689 525 34 Antisense
ACATCCAAGCCCAAACAAAGAGACT 505 105 38 Antisense
CAAGCCCAAACAAAGAGACTTGGAG 447 185 43 Antisense
GAGACTTGGAGTTGATGCACCATGT 573 393 57 Antisense
ATGCACCATGTAGTGTGCTCGATCC 578 43 71 Antisense
Sequence Source Affymetrix Proprietary Database