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[172776_x_at] claustrin like /// claustrin like

Description C36A4.5 /REP_DB=WormBase Gene ID /WP=CE03073 /TR=Q18494 /GB=CAA91271.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=claustrin like
Cluster 6grp_high1_10_10 > 98      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_total > 98      4grp_total > 48      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 144.2
(-3)
P 		228.6
(0.1)
P 		309.5
(3)
P 		216.9
(-0.4)
P 		165
B 239.7
(0.5)
P 		197.6
(-1.4)
P 		296.5
(3)
P 		161
(-3)
P 		136
C 167.6
(-3)
P 		234.5
(0)
P 		300.8
(3)
P 		224.6
(-0.4)
P 		133
avr 183.8
(-3) 		220.2
(-1.2) 		302.3
(3) 		200.8
(-2.1) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 984
1 2 3 4 5 6 range
A 185.1
(-3)
A 		242.5
(-2.6)
P 		205.6
(-2.9)
P 		378.2
(-1.7)
P 		766.3
(0.8)
P 		1106.3
(3)
P 		921
B 122
(-3)
P 		182.5
(-2.6)
P 		191.9
(-2.5)
P 		453.7
(-0.5)
P 		700.6
(1.3)
P 		929
(3)
P 		807
C 215
(-3)
P 		233.3
(-2.9)
P 		278.5
(-2.5)
P 		313.7
(-2.2)
P 		979.3
(3)
P 		622.3
(0.2)
P 		764
avr 174
(-3) 		219.4
(-2.6) 		225.3
(-2.6) 		381.9
(-1.2) 		815.4
(2.4) 		885.9
(3) 		712
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 52.5
(-0.5)
P 		49.6
(-0.8)
P 		80.9
(3)
P 		31.8
(-3)
P 		49
B 76.4
(3)
P 		48.8
(-0.9)
P 		68.7
(1.9)
P 		34.3
(-3)
P 		42
C 55.5
(-1.4)
P 		67.4
(-0.4)
P 		104.8
(3)
P 		37.9
(-3)
P 		67
avr 61.5
(0.2) 		55.3
(-0.5) 		84.8
(3) 		34.7
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 34.1
(-3)
A 		86.2
(-1.7)
P 		44.8
(-2.7)
P 		95.9
(-1.4)
P 		231.2
(2)
P 		269.4
(3)
P 		235
B 42.4
(-3)
P 		60.8
(-2.6)
P 		46.6
(-2.9)
P 		120.2
(-1.5)
P 		284.7
(1.8)
P 		346.4
(3)
P 		304
C 79.7
(-2.6)
P 		71.2
(-2.8)
P 		70.9
(-2.8)
P 		63.1
(-3)
P 		316.9
(3)
P 		208.3
(0.4)
P 		254
avr 52.1
(-3) 		72.7
(-2.5) 		54.1
(-2.9) 		93.1
(-1.9) 		277.6
(3) 		274.7
(2.9) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172776_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6014
Sequence Type Exemplar sequence
Representative Public ID C36A4.5 NCBI
Target Description C36A4.5 /REP_DB=WormBase Gene ID /WP=CE03073 /TR=Q18494 /GB=CAA91271.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=claustrin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065377(11), NM_060323(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065377 NCBI Caenorhabditis elegans C36A4.5 (C36A4.5) mRNA, complete cds. 11/11 A 
NM_060323 NCBI Caenorhabditis elegans F25D7.4 (F25D7.4) mRNA, complete cds. 10/11 A 
GENEFINDER00000011706 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10426610:10429980:-1 10/11 None
SNAP00000028395 ENSEMBL cdna:SNAP chromosome:CEL140:III:3844870:3856700:1 11/11 None
GENEFINDER00000028407 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3844870:3848239:1 11/11 None
F25D7.4 ENSEMBL cdna:known chromosome:CEL140:I:10426357:10430599:-1 gene:F25D7.4 10/11 A 
C36A4.5 ENSEMBL cdna:known chromosome:CEL140:III:3844252:3848239:1 gene:C36A4.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067920 7/11 Cross Hyb Matching Probes A 
NM_001026265 1/11 Cross Hyb Matching Probes None
NM_001026266 1/11 Cross Hyb Matching Probes None
NM_001026267 1/11 Cross Hyb Matching Probes None
SNAP00000011701 8/11 Cross Hyb Matching Probes None
SNAP00000011757 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011766 1/11 Cross Hyb Matching Probes None
SNAP00000037840 3/11 Cross Hyb Matching Probes None
SNAP00000037841 3/11 Cross Hyb Matching Probes None
GENEFINDER00000037851 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037857 3/11 Cross Hyb Matching Probes None
F32A7.5c 1/11 Cross Hyb Matching Probes A 
F32A7.5a 1/11 Cross Hyb Matching Probes A 
F32A7.5b 1/11 Cross Hyb Matching Probes A 
F42A6.3 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3844251-3848239(+) 98.5 100.0
chrI:10426540-10430530(-) 96.58 97.49
Public Domain and Genome References
Gene Title claustrin like
claustrin like
Ensembl F25D7.4
C36A4.5
Entrez Gene 172918 Entrez gene
175498 Entrez gene
SwissProt Q18494 EMBL-EBI
Q93562 EMBL-EBI
WormBase CE03073 Wormbase
CE09632 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91271 Hypothetical protein C36A4.5 [Caenorhabditis elegans] ref|NP_497778.1| C36A4.5 [Caenorhabditis elegans] 0.0
blast CAB01697 Hypothetical protein F25D7.4 [Caenorhabditis elegans] ref|NP_492724.1| F25D7.4 [Caenorhabditis elegans] 0.0
blast CAB05498 Hypothetical protein F32A7.5a [Caenorhabditis elegans] ref|NP_001021436.1| F32A7.5a [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497778.1 1 59-78
C36A4.5 1 59-78
Sequence
Target Sequence 
>C. ELEGANS:172776_X_AT
gccacggggaacaagcacatgcagcacaaaatggaggaatcaagattccgaagcatgatt
tgatgcagtcgcactccaatgtgattgagaatagagctgctgtaaagtacgaaaagactg
atccagcattggatgctgtgctcaatgcatgtgcacaggagagtgaacagatcgatgcct
ctcatccagaaaatctccacatgccagctgctccaggatccgtcgcctcagcgaagccag
tcaaattcgcgcgtccatactatttcgacgtggtcacagtgccaaggtacgagaaattgg
agacctccgttgaagcagacggtctgcaagagttcatctcaaaggtgcgctcgagaaatg
tgatcctctcgtcgaaggaaatctccggagagcagctgcaggcgattctcagaggaaagc
aaacatggtgtgatcgtgctcatccatgcaacgtgatcccaacacattcctctccgatgc
tgcacgatttccgccagaagaacgaggagcagttcgccgcgaatcatctgcagttttcaa
tgcccgtggagaagcagcggacgacagtgagctcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACGGGGAACAAGCACATGCAGC 432 279 2255 Antisense
GATTTGATGCAGTCGCACTCCAATG 270 425 2311 Antisense
TGAACAGATCGATGCCTCTCATCCA 637 573 2418 Antisense
CAGAAAATCTCCACATGCCAGCTGC 89 205 2441 Antisense
CGAAGCCAGTCAAATTCGCGCGTCC 309 253 2486 Antisense
GCAGCTGCAGGCGATTCTCAGAGGA 575 313 2646 Antisense
ATCGTGCTCATCCATGCAACGTGAT 133 35 2687 Antisense
TGCAACGTGATCCCAACACATTCCT 442 577 2701 Antisense
GAGCAGTTCGCCGCGAATCATCTGC 452 389 2761 Antisense
TCATCTGCAGTTTTCAATGCCCGTG 442 621 2778 Antisense
GCAGCGGACGACAGTGAGCTCGGAC 332 313 2808 Antisense
Sequence Source Affymetrix Proprietary Database