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[172775_x_at] claustrin like /// claustrin like

Description F25D7.4 /REP_DB=WormBase Gene ID /WP=CE09632 /TR=Q93562 /GB=CAB01697.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=claustrin like
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 03      4grp_high_8_8 > 39      6grp_highest_nonorm > 94      6grp_total > 98      4grp_total > 40      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 207.2
(-3)
P 		266.1
(-0.8)
P 		316.4
(1.2)
P 		364.3
(3)
P 		157
B 151.8
(-3)
P 		228.5
(0.7)
P 		276
(3)
P 		242.6
(1.4)
P 		124
C 168
(-2.8)
P 		363.9
(3)
P 		335.3
(2.2)
P 		161.6
(-3)
P 		202
avr 175.7
(-3) 		286.2
(2) 		309.2
(3) 		256.2
(0.6) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1103
1 2 3 4 5 6 range
A 111.7
(-3)
P 		218.4
(-2.4)
P 		205.4
(-2.5)
P 		400.2
(-1.4)
P 		879.6
(1.2)
P 		1214.6
(3)
P 		1103
B 197.3
(-3)
P 		215.3
(-2.9)
P 		273.7
(-2.4)
P 		364.2
(-1.6)
P 		750.3
(1.5)
P 		937.3
(3)
P 		740
C 182.3
(-3)
P 		206.7
(-2.8)
P 		283.6
(-2.2)
P 		372.8
(-1.5)
P 		962
(3)
P 		620.3
(0.4)
P 		780
avr 163.8
(-3) 		213.5
(-2.6) 		254.2
(-2.3) 		379.1
(-1.3) 		864
(2.5) 		924.1
(3) 		760
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 75.4
(1.5)
P 		57.8
(-2.1)
P 		82.7
(3)
P 		53.3
(-3)
P 		29
B 48.4
(-3)
P 		56.4
(0.1)
P 		64
(3)
P 		51.7
(-1.7)
P 		16
C 55.6
(-1.1)
P 		104.6
(2.2)
P 		116.9
(3)
P 		27.2
(-3)
P 		90
avr 59.8
(-0.8) 		72.9
(0.9) 		87.9
(3) 		44.1
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 20.6
(-3)
P 		77.7
(-1.8)
P 		44.7
(-2.5)
P 		101.5
(-1.2)
P 		265.4
(2.3)
P 		295.7
(3)
P 		275
B 68.6
(-3)
P 		71.7
(-2.9)
P 		66.5
(-3)
P 		96.5
(-2.4)
P 		304.8
(2.1)
P 		349.5
(3)
P 		283
C 67.6
(-2.9)
P 		63.1
(-3)
P 		72.2
(-2.8)
P 		75
(-2.7)
P 		311.3
(3)
P 		207.6
(0.5)
P 		248
avr 52.3
(-3) 		70.8
(-2.5) 		61.1
(-2.8) 		91
(-2) 		293.8
(3) 		284.3
(2.8) 		242
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172775_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1820
Sequence Type Exemplar sequence
Representative Public ID F25D7.4 NCBI
Target Description F25D7.4 /REP_DB=WormBase Gene ID /WP=CE09632 /TR=Q93562 /GB=CAB01697.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=claustrin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065377(9), NM_060323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065377 NCBI Caenorhabditis elegans C36A4.5 (C36A4.5) mRNA, complete cds. 9/11 A 
NM_060323 NCBI Caenorhabditis elegans F25D7.4 (F25D7.4) mRNA, complete cds. 11/11 A 
SNAP00000011701 ENSEMBL cdna:SNAP chromosome:CEL140:I:10422728:10429980:-1 9/11 None
GENEFINDER00000011706 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10426610:10429980:-1 11/11 None
SNAP00000028395 ENSEMBL cdna:SNAP chromosome:CEL140:III:3844870:3856700:1 9/11 None
GENEFINDER00000028407 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3844870:3848239:1 9/11 None
F25D7.4 ENSEMBL cdna:known chromosome:CEL140:I:10426357:10430599:-1 gene:F25D7.4 11/11 A 
C36A4.5 ENSEMBL cdna:known chromosome:CEL140:III:3844252:3848239:1 gene:C36A4.5 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067920 7/11 Cross Hyb Matching Probes A 
NM_001026265 1/11 Cross Hyb Matching Probes None
NM_001026266 1/11 Cross Hyb Matching Probes None
NM_001026267 1/11 Cross Hyb Matching Probes None
SNAP00000011757 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011766 1/11 Cross Hyb Matching Probes None
SNAP00000037840 4/11 Cross Hyb Matching Probes None
SNAP00000037841 2/11 Cross Hyb Matching Probes None
GENEFINDER00000037851 3/11 Cross Hyb Matching Probes None
GENEFINDER00000037857 4/11 Cross Hyb Matching Probes None
F32A7.5c 1/11 Cross Hyb Matching Probes A 
F32A7.5a 1/11 Cross Hyb Matching Probes A 
F32A7.5b 1/11 Cross Hyb Matching Probes A 
F42A6.3 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3844251-3848239(+) 97.5 97.53
chrI:10426540-10430530(-) 100.0 100.0
Public Domain and Genome References
Gene Title claustrin like
claustrin like
Ensembl F25D7.4
C36A4.5
Entrez Gene 172918 Entrez gene
175498 Entrez gene
SwissProt Q18494 EMBL-EBI
Q93562 EMBL-EBI
WormBase CE03073 Wormbase
CE09632 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91271 Hypothetical protein C36A4.5 [Caenorhabditis elegans] ref|NP_497778.1| C36A4.5 [Caenorhabditis elegans] 0.0
blast CAB01697 Hypothetical protein F25D7.4 [Caenorhabditis elegans] ref|NP_492724.1| F25D7.4 [Caenorhabditis elegans] 0.0
blast CAB05498 Hypothetical protein F32A7.5a [Caenorhabditis elegans] ref|NP_001021436.1| F32A7.5a [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497778.1 1 59-78
C36A4.5 1 59-78
Sequence
Target Sequence 
>C. ELEGANS:172775_X_AT
gccacggggaacaagcacatgcagcacaaaatggaggaatcaagattccgaagcatgatt
tgatgcagtcgcactccaatgtgattgagaatggagctgctgtaaagtacgagaagactg
atccagcattggatgctgtactcaatgcatgtgcacaggagagtgaacagatcgatgcct
ctcatccagaaaatctccacatgccagctgctccaggatccgtcgcctcagcgaagccag
tcaaattcgcgcgtccatactatttcgacgtggtcacagtgccaaggaacgagaaattgg
agacctccgttgaagcagacggtctgcaagagttcatctcaaaggtgcgctcgagaaatg
tgatcctcgcgtcgaaggaaatctccggagagcagctgcagtcgattctcagaggaaagc
aaacatggtgtgatcgtgctcatccatgcaacgtgatcccaacacattcctctccgatgc
tgcacgatttccgccagaagaacgaggagcaattcgccgcgaatcatctgcagttttcaa
tgcccgtggagaagcagcggacgacagtgagctcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACGGGGAACAAGCACATGCAGC 433 279 2189 Antisense
GATTTGATGCAGTCGCACTCCAATG 271 425 2245 Antisense
TGAACAGATCGATGCCTCTCATCCA 638 573 2352 Antisense
CAGAAAATCTCCACATGCCAGCTGC 90 205 2375 Antisense
CGAAGCCAGTCAAATTCGCGCGTCC 310 253 2420 Antisense
AGAGCAGCTGCAGTCGATTCTCAGA 657 69 2577 Antisense
ATCGTGCTCATCCATGCAACGTGAT 134 35 2621 Antisense
TGCAACGTGATCCCAACACATTCCT 443 577 2635 Antisense
GAACGAGGAGCAATTCGCCGCGAAT 20 349 2688 Antisense
GCCGCGAATCATCTGCAGTTTTCAA 492 285 2704 Antisense
GCAGCGGACGACAGTGAGCTCGGAC 333 313 2742 Antisense
Sequence Source Affymetrix Proprietary Database