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[172769_x_at] cytochrome P450

Description F44C8.1 /REP_DB=WormBase Gene ID /WP=CE10378 /TR=O16362 /GB=AAB65888.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      6grp_highest_nonorm > 90      6grp_total > 18      4grp_total > 14      6grp_highest_sub > De      6grp_cgc > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 158.3
(1.7)
P 		58.4
(-3)
P 		66.4
(-2.6)
A 		187
(3)
P 		129
B 153
(0.4)
P 		92.9
(-3)
A 		98.5
(-2.7)
A 		197.8
(3)
P 		105
C 109.9
(-0.2)
P 		43
(-3)
A 		60.3
(-2.3)
A 		185.2
(3)
P 		142
avr 140.4
(0.6) 		64.8
(-3) 		75.1
(-2.5) 		190
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 209.1
(3)
P 		125.9
(-1.5)
P 		98.6
(-3)
P 		120.2
(-1.8)
P 		155.9
(0.1)
P 		106.9
(-2.5)
P 		111
B 182.7
(3)
P 		131.4
(-2.1)
P 		153.8
(0.1)
P 		122.1
(-3)
P 		124.3
(-2.8)
P 		127
(-2.5)
P 		61
C 145.3
(2.8)
P 		125
(-0.6)
P 		114.1
(-2.4)
P 		146.5
(3)
P 		110.7
(-3)
P 		143.1
(2.4)
P 		36
avr 179
(3) 		127.4
(-2.5) 		122.2
(-3) 		129.6
(-2.2) 		130.3
(-2.1) 		125.7
(-2.6) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 57.6
(3)
P 		12.7
(-3)
P 		17.4
(-2.4)
A 		27.4
(-1)
P 		45
B 48.8
(3)
P 		22.9
(-3)
A 		22.8
(-3)
A 		42.2
(1.5)
P 		26
C 36.4
(3)
P 		12.4
(-3)
A 		21
(-0.9)
A 		31.2
(1.7)
P 		24
avr 47.6
(3) 		16
(-3) 		20.4
(-2.2) 		33.6
(0.3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 38.5
(1)
P 		44.8
(2.5)
P 		21.5
(-3)
P 		30.5
(-0.9)
P 		47.1
(3)
P 		26
(-1.9)
P 		26
B 63.6
(3)
P 		43.7
(-0.8)
P 		37.4
(-2)
P 		32.3
(-3)
P 		50.5
(0.5)
P 		47.4
(-0.1)
P 		31
C 53.9
(3)
P 		38.2
(-0.8)
P 		29
(-3)
P 		29.5
(-2.9)
P 		35.8
(-1.4)
P 		47.9
(1.6)
P 		25
avr 52
(3) 		42.2
(0.4) 		29.3
(-3) 		30.8
(-2.6) 		44.5
(1) 		40.4
(-0.1) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172769_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15234
Sequence Type Exemplar sequence
Representative Public ID F44C8.1 NCBI
Target Description F44C8.1 /REP_DB=WormBase Gene ID /WP=CE10378 /TR=O16362 /GB=AAB65888.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071211 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-33C4) (cyp-33C4) mRNA, complete cds. 11/11 None
F44C8.1 ENSEMBL cdna:known chromosome:CEL140:V:2235858:2237765:1 gene:F44C8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071215 3/11 Cross Hyb Matching Probes A 
NM_071217 1/11 Cross Hyb Matching Probes A 
NM_071216 1/11 Cross Hyb Matching Probes A 
SNAP00000036001 3/11 Cross Hyb Matching Probes None
SNAP00000036002 1/11 Cross Hyb Matching Probes None
SNAP00000036003 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036011 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036013 3/11 Cross Hyb Matching Probes None
GENEFINDER00000036014 1/11 Cross Hyb Matching Probes None
F41B5.3 3/11 Cross Hyb Matching Probes A 
F41B5.7 1/11 Cross Hyb Matching Probes A 
F41B5.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2236006-2237765(+) 100.0 100.0
chrV:2242803-2246794(+) 96.15 96.15
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-33C4
Ensembl F44C8.1
Entrez Gene 178704 Entrez gene
SwissProt O16362 EMBL-EBI
WormBase CE10378 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246949_AT cytochrome P450 family protein at
MG-U74BV2:112213_AT cytochrome P450, family 2, subfamily j, polypeptide 9 mm
MOE430A:1424677_AT cytochrome P450, family 2, subfamily j, polypeptide 9 mm
MOUSE430A_2:1424677_AT cytochrome P450, family 2, subfamily j, polypeptide 9 mm
MOUSE430_2:1424677_AT cytochrome P450, family 2, subfamily j, polypeptide 9 mm
MG-U74CV2:133058_AT Cytochrome P450, family 2, subfamily j, polypeptide 9 (Cyp2j9), mRNA mm
MOE430B:1445086_AT Cytochrome P450, family 2, subfamily j, polypeptide 9 (Cyp2j9), mRNA mm
MOUSE430_2:1445086_AT Cytochrome P450, family 2, subfamily j, polypeptide 9 (Cyp2j9), mRNA mm
RT-U34:U40004_S_AT cytochrome P450, family 2, subfamily j, polypeptide 9 rn
RG-U34A:U40004_S_AT cytochrome P450, family 2, subfamily j, polypeptide 9 rn
RT-U34:U40000_AT cytochrome P450, family 2, subfamily j, polypeptide 9 rn
RG-U34A:U40000_AT cytochrome P450, family 2, subfamily j, polypeptide 9 rn
RT-U34:U39943_S_AT cytochrome P450, family 2, subfamily j, polypeptide 9 rn
RG-U34A:U39943_S_AT cytochrome P450, family 2, subfamily j, polypeptide 9 rn
RAE230A:1370706_A_AT cytochrome P450, family 2, subfamily j, polypeptide 9 rn
RAT230_2:1370706_A_AT cytochrome P450, family 2, subfamily j, polypeptide 9 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65888 Cytochrome p450 family protein 33C4 [Caenorhabditis elegans] ref|NP_503612.1| CYtochrome P450 family member (cyp-33C4) [Caenorhabditis elegans] 0.0
blast AAG24101 Cytochrome p450 family protein 33C5 [Caenorhabditis elegans] ref|NP_503616.1| CYtochrome P450 family member (cyp-33C5) [Caenorhabditis elegans] 0.0
blast AAG24106 Cytochrome p450 family protein 33C3 [Caenorhabditis elegans] ref|NP_503615.1| CYtochrome P450 family member (cyp-33C3) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.2E-101
Sequence
Target Sequence 
>C. ELEGANS:172769_X_AT
tgttctccaacaagcaactctcaaatacttgcctggacctttggcttgcaggactttcca
caactaatactacagttaactggacaatatgctatgttttgaatcatcctgatgttcttc
aaaagatgaatgaagagtttgaccaggtggttggtagtgataggctggtgacaatgggtg
ataagaataatctaccttatttcaatgccgtgctcaatgagtctcaaagatgtgccaata
tcgtgccaattaatttgttccatgcaactacaaaggatactgtaattaatggatatccag
ttaaaaagggaactggagtcatcgcccagattagtacagttatgctagatgagaaaatct
tcccagacccctataaattcaaccctgatagattcatagacgagaatggaaaacctatca
agatcgagcagctcatcccattctcaatcggaaagcggcaatgcccgggagaagggcttg
cgcggatggagatgttcctctttttggcgaattttttcaatagatacaagatctcaccgt
cttctaaaggtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTCCAACAAGCAACTCTCAAA 204 563 866 Antisense
AACTCTCAAATACTTGCCTGGACCT 262 139 881 Antisense
TGGACCTTTGGCTTGCAGGACTTTC 257 535 899 Antisense
GCAGGACTTTCCACAACTAATACTA 328 251 913 Antisense
ATCTACCTTATTTCAATGCCGTGCT 632 31 1055 Antisense
GGAGTCATCGCCCAGATTAGTACAG 43 515 1180 Antisense
AGACCCCTATAAATTCAACCCTGAT 671 69 1230 Antisense
AAGATCGAGCAGCTCATCCCATTCT 654 155 1285 Antisense
AAGGGCTTGCGCGGATGGAGATGTT 580 159 1337 Antisense
GAGATGTTCCTCTTTTTGGCGAATT 132 397 1354 Antisense
GATCTCACCGTCTTCTAAAGGTTTT 429 419 1395 Antisense
Sequence Source Affymetrix Proprietary Database