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[172768_x_at] cytochrome P450

Description F41B5.3 /REP_DB=WormBase Gene ID /WP=CE27379 /TR=O16671 /GB=AAG24101.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_high1_10_10 > 05      6grp_total > 06      4grp_total > 20      6grp_total_sub > Decrease      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 118.2
(-0.1)
P 		120.5
(0.2)
A 		97.1
(-3)
A 		141
(3)
P 		44
B 99.2
(-3)
P 		133.4
(3)
A 		109.8
(-1.1)
A 		124.5
(1.4)
P 		34
C 131.5
(1.4)
P 		77.9
(-3)
A 		84.4
(-2.5)
A 		150.8
(3)
P 		73
avr 116.3
(-0.2) 		110.6
(-1.1) 		97.1
(-3) 		138.8
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 151.8
(3)
P 		76.2
(-2.2)
P 		102.7
(-0.4)
P 		109.7
(0.1)
P 		96.5
(-0.8)
A 		65
(-3)
P 		87
B 171.3
(3)
P 		126.3
(0.3)
P 		112.6
(-0.6)
P 		72.2
(-3)
P 		89.1
(-2)
P 		73.4
(-2.9)
P 		99
C 94
(0.4)
P 		110.2
(2.7)
P 		101.6
(1.5)
P 		86.2
(-0.7)
P 		112.3
(3)
P 		69.6
(-3)
P 		43
avr 139
(3) 		104.2
(0) 		105.6
(0.1) 		89.4
(-1.3) 		99.3
(-0.4) 		69.3
(-3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 43
(3)
P 		26.1
(-1.5)
A 		25.4
(-1.7)
A 		20.6
(-3)
P 		22
B 31.6
(2)
P 		32.9
(3)
A 		25.4
(-3)
A 		26.5
(-2.1)
P 		8
C 43.5
(3)
P 		22.4
(-3)
A 		29.4
(-1)
A 		25.4
(-2.1)
P 		21
avr 39.4
(3) 		27.1
(-1.9) 		26.7
(-2) 		24.2
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 28
(2.5)
P 		27.1
(2.1)
P 		22.4
(-0)
P 		27.8
(2.4)
P 		29.1
(3)
A 		15.8
(-3)
P 		13
B 59.6
(3)
P 		42
(0.4)
P 		27.3
(-1.8)
P 		19.1
(-3)
P 		36.2
(-0.5)
P 		27.4
(-1.8)
P 		41
C 34.9
(2.6)
P 		33.6
(2.1)
P 		25.9
(-0.3)
P 		17.3
(-3)
P 		36.3
(3)
P 		23.3
(-1.1)
P 		19
avr 40.8
(3) 		34.2
(1) 		25.2
(-1.8) 		21.4
(-3) 		33.9
(0.9) 		22.2
(-2.8) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172768_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15804
Sequence Type Exemplar sequence
Representative Public ID F41B5.3 NCBI
Target Description F41B5.3 /REP_DB=WormBase Gene ID /WP=CE27379 /TR=O16671 /GB=AAG24101.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071215(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071215 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-33C5) (cyp-33C5) mRNA, complete cds. 11/11 None
SNAP00000036001 ENSEMBL cdna:SNAP chromosome:CEL140:V:2244856:2246798:1 11/11 None
GENEFINDER00000036013 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2244856:2246798:1 11/11 None
F41B5.3 ENSEMBL cdna:known chromosome:CEL140:V:2244843:2246843:1 gene:F41B5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071211 4/11 Cross Hyb Matching Probes A 
NM_071217 1/11 Cross Hyb Matching Probes A 
NM_071216 2/11 Cross Hyb Matching Probes A 
SNAP00000036002 2/11 Cross Hyb Matching Probes None
SNAP00000036003 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036011 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036014 2/11 Cross Hyb Matching Probes None
F44C8.1 4/11 Cross Hyb Matching Probes A 
F41B5.7 2/11 Cross Hyb Matching Probes A 
F41B5.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2244855-2246695(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-33C5
Ensembl F41B5.3
Entrez Gene 178706 Entrez gene
SwissProt O16671 EMBL-EBI
WormBase CE27379 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627188_AT phantom dm
DROSGENOME1:145319_AT phantom dm
MG-U74BV2:107092_AT cytochrome P450, family 2, subfamily c, polypeptide 44 mm
MG-U74CV2:137246_F_AT cytochrome P450, family 2, subfamily c, polypeptide 44 mm
MOE430A:1424576_S_AT cytochrome P450, family 2, subfamily c, polypeptide 44 mm
MOUSE430A_2:1424576_S_AT cytochrome P450, family 2, subfamily c, polypeptide 44 mm
MOUSE430_2:1424576_S_AT cytochrome P450, family 2, subfamily c, polypeptide 44 mm
MU19KSUBC:TC39369_AT Cytochrome P450, family 2, subfamily c, polypeptide 44, mRNA (cDNA clone IMAGE:5097065) mm
RT-U34:RC_AI169372_G_AT cytochrome P450, family 2, subfamily c, polypeptide 23 rn
RG-U34A:RC_AI169372_G_AT cytochrome P450, family 2, subfamily c, polypeptide 23 rn
RT-U34:X55446MRNA_AT cytochrome P450, family 2, subfamily c, polypeptide 23 rn
RG-U34A:X55446MRNA_AT cytochrome P450, family 2, subfamily c, polypeptide 23 rn
RT-U34:U04733_S_AT cytochrome P450, family 2, subfamily c, polypeptide 23 rn
RG-U34A:U04733_S_AT cytochrome P450, family 2, subfamily c, polypeptide 23 rn
RAE230A:1367988_AT cytochrome P450, family 2, subfamily c, polypeptide 23 rn
RAT230_2:1367988_AT cytochrome P450, family 2, subfamily c, polypeptide 23 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24101 Cytochrome p450 family protein 33C5 [Caenorhabditis elegans] ref|NP_503616.1| CYtochrome P450 family member (cyp-33C5) [Caenorhabditis elegans] 0.0
blast T32036 hypothetical protein F41B5.3 - Caenorhabditis elegans 0.0
blast AAB65888 Cytochrome p450 family protein 33C4 [Caenorhabditis elegans] ref|NP_503612.1| CYtochrome P450 family member (cyp-33C4) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-169
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 7.0E-98
Sequence
Target Sequence 
>C. ELEGANS:172768_X_AT
agaattcgagctgttctccaacactcaattctcaaatacttgcttggacctttggctggc
aggagtttccacaactaacactacagttaactggacaatatgctatgttttgaatcatcc
tgatgttcttcaaaagatgaatgaagagtttgaccaggtggttggaagtgataggctggt
gacaatgggtgataagaataatctaccttatttcaatgccgtgctcaatgagtctcaaag
atgtgccaatatcgtgccaataaatttgttccatgcaactacaaaggatactgtaattaa
tggatatccagttaaaaagggaactggagtcatcgcccagattagtacagttatgctaga
tgagaaaatcttcccagagccatataaattcaaccctgatagattcatagacgagaatgg
aaaacctatcaagatcgagcagctcatcccattctcaatcggaaagcggcaatgcccggg
agaagggcttgcgcggatggagatattcctctttttggcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATTCGAGCTGTTCTCCAACACT 136 75 855 Antisense
TTCTCCAACACTCAATTCTCAAATA 8 695 868 Antisense
TTCTCAAATACTTGCTTGGACCTTT 639 689 883 Antisense
GGACCTTTGGCTGGCAGGAGTTTCC 71 523 900 Antisense
ATCTACCTTATTTCAATGCCGTGCT 633 31 1055 Antisense
GGAGTCATCGCCCAGATTAGTACAG 44 515 1180 Antisense
GAGAAAATCTTCCCAGAGCCATATA 417 391 1216 Antisense
AAGATCGAGCAGCTCATCCCATTCT 655 155 1285 Antisense
ATCCCATTCTCAATCGGAAAGCGGC 304 37 1300 Antisense
GAAGGGCTTGCGCGGATGGAGATAT 690 333 1336 Antisense
TGGAGATATTCCTCTTTTTGGCGAA 298 549 1352 Antisense
Sequence Source Affymetrix Proprietary Database