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[172760_x_at]

Description ZC410.6_rc /REP_DB=WormBase Gene ID /WP=CE03810 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(HINXTON) TR:Q23299 protein_id:CAA92569.1
Cluster 6grp_high1_10_10 > 54      6grp_total > 10      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6240
1 2 3 4 range
A 1015.1
(-2.4)
P 		412.6
(-3)
M 		556.9
(-2.8)
P 		6178
(3)
P 		5765
B 1439.9
(-1)
P 		439
(-3)
A 		474.3
(-2.9)
A 		3468.4
(3)
P 		3029
C 1057.6
(-2.2)
P 		341.7
(-2.9)
A 		254
(-3)
M 		6493.5
(3)
P 		6240
avr 1170.9
(-2.1) 		397.8
(-3) 		428.4
(-3) 		5380
(3) 		4982

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2495
1 2 3 4 5 6 range
A 759.8
(-1.4)
P 		449.3
(-2.5)
P 		2008.8
(3)
P 		306.6
(-3)
A 		1039.8
(-0.4)
P 		776.8
(-1.3)
P 		1702
B 806.8
(-0.3)
P 		1000.5
(1.9)
P 		688.5
(-1.6)
P 		568.3
(-3)
P 		586.4
(-2.8)
P 		1098.5
(3)
P 		530
C 269.1
(-2.8)
A 		2673.9
(3)
P 		347.5
(-2.6)
M 		727.7
(-1.7)
P 		178.6
(-3)
M 		1076.8
(-0.8)
P 		2495
avr 611.9
(-2.4) 		1374.6
(3) 		1014.9
(0.4) 		534.2
(-3) 		601.6
(-2.5) 		984
(0.2) 		840
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1006
1 2 3 4 range
A 369.6
(-0.9)
P 		89.6
(-3)
M 		145.6
(-2.6)
P 		904.3
(3)
P 		815
B 459.2
(0.3)
P 		108.4
(-3)
A 		109.9
(-3)
A 		739.1
(3)
P 		631
C 350.1
(-1.4)
P 		98.2
(-2.9)
A 		88.5
(-3)
M 		1094.9
(3)
P 		1006
avr 393
(-0.8) 		98.7
(-3) 		114.7
(-2.9) 		912.8
(3) 		814

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 758
1 2 3 4 5 6 range
A 140.1
(-2)
P 		159.8
(-1.6)
P 		437.5
(3)
P 		77.8
(-3)
A 		313.8
(0.9)
P 		189.1
(-1.1)
P 		360
B 280.7
(0)
P 		333
(1.2)
P 		167.2
(-2.6)
P 		150.5
(-3)
P 		238.2
(-1)
P 		409.6
(3)
P 		259
C 99.8
(-2.7)
A 		815.9
(3)
P 		88.5
(-2.8)
M 		146.3
(-2.3)
P 		57.8
(-3)
M 		360.5
(-0.6)
P 		758
avr 173.5
(-2.1) 		436.2
(3) 		231.1
(-1) 		124.9
(-3) 		203.3
(-1.5) 		319.7
(0.8) 		311
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172760_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28136
Sequence Type Exemplar sequence
Representative Public ID ZC410.6 NCBI
Target Description ZC410.6_rc /REP_DB=WormBase Gene ID /WP=CE03810 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(HINXTON) TR:Q23299 protein_id:CAA92569.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) ZC410.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZC410.6 ZC410.6_rc /REP_DB=WormBase Gene ID /WP=CE03810 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(HINXTON) TR:Q23299 protein_id:CAA92569.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 5/11 Cross Hyb Matching Probes A 
NM_075710 1/11 Cross Hyb Matching Probes None
NM_077120 1/11 Cross Hyb Matching Probes A 
NM_078408 1/11 Cross Hyb Matching Probes A 
NM_073039 3/11 Cross Hyb Matching Probes A 
NM_061393 5/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 2/11 Cross Hyb Matching Probes None
GENEFINDER00000042962 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 4/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 2/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021686 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021882 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 7/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 4/11 Cross Hyb Matching Probes None
GENEFINDER00000024789 3/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 5/11 Cross Hyb Matching Probes None
GENEFINDER00000006188 3/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 3/11 Cross Hyb Matching Probes None
GENEFINDER00000012659 3/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 4/11 Cross Hyb Matching Probes None
GENEFINDER00000019681 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021403 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021407 3/11 Cross Hyb Matching Probes None
GENEFINDER00000021411 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024954 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026636 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 4/11 Cross Hyb Matching Probes None
GENEFINDER00000033792 3/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 2/11 Cross Hyb Matching Probes None
GENEFINDER00000005827 3/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 3/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029502 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 4/11 Cross Hyb Matching Probes None
GENEFINDER00000008040 3/11 Cross Hyb Matching Probes None
GENEFINDER00000007905 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043457 3/11 Cross Hyb Matching Probes None
GENEFINDER00000044480 1/11 Cross Hyb Matching Probes None
T02H6.3 5/11 Cross Hyb Matching Probes A 
Y116A8C.41 5/11 Cross Hyb Matching Probes A 
Y54B9A.1 3/11 Cross Hyb Matching Probes A 
B0310.4 1/11 Cross Hyb Matching Probes None
C24A3.1 1/11 Cross Hyb Matching Probes A 
C53C11.4 1/11 Cross Hyb Matching Probes A 
SNAP00000030920 9/11 Negative Strand Matching Probes None
GENEFINDER00000030940 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172760_X_AT
aaaagccgctgcgagaccattcgtggtgagacccatcgtggtgagacccatcgtggtgag
acccattgtggcgagacctttcgtggtgagacccttcgtggtgagacccttcgtggtgag
acccatcgtggtgagacccatcgtggtgagacccttcgtggtgagacccatcgtggtgag
acccatcgtggtgagacccatcgtggtgaaacccttcgtggtgagacccttcgtggtgag
acccatcgtggtgaaacccttcgtggtgagacccatcgtggtgagacccattgtggcgag
acctttcgtggtgagacccatcgtggtgagacccatcgtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCCGCTGCGAGACCATTCGTG 701 131 40 Antisense
GACCATTCGTGGTGAGACCCATCGT 575 381 54 Antisense
TGAGACCCATTGTGGCGAGACCTTT 533 565 96 Antisense
GTGGTGAGACCCATCGTGGTGAGAC 313 489 167 Antisense
TGGTGAGACCCTTCGTGGTGAGACC 533 551 183 Antisense
ATCGTGGTGAGACCCATCGTGGTGA 458 35 209 Antisense
CCCATCGTGGTGAAACCCTTCGTGG 162 259 236 Antisense
CCATCGTGGTGAAACCCTTCGTGGT 129 269 282 Antisense
GGTGAGACCCATTGTGGCGAGACCT 371 501 319 Antisense
CCTTTCGTGGTGAGACCCATCGTGG 463 259 341 Antisense
CCATCGTGGTGAGACCCATCGTGGT 125 271 357 Antisense
Sequence Source Affymetrix Proprietary Database