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[172757_x_at] cyclin like

Description ZK678.3 /REP_DB=WormBase Gene ID /WP=CE15387 /TR=Q94412 /GB=CAB01905.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cyclin like
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 240.3
(-2.5)
P 		217.5
(-3)
A 		238.8
(-2.5)
A 		496.3
(3)
P 		279
B 201.6
(-1.2)
P 		185.6
(-2.1)
A 		171.4
(-3)
M 		270.4
(3)
P 		99
C 198.3
(-2.2)
P 		224.8
(-1.4)
A 		172.7
(-3)
A 		364.9
(3)
P 		192
avr 213.4
(-2.4) 		209.3
(-2.5) 		194.3
(-3) 		377.2
(3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 496
1 2 3 4 5 6 range
A 232.9
(-1.2)
P 		129.9
(-3)
P 		259.8
(-0.8)
P 		221.3
(-1.4)
P 		344.9
(0.7)
P 		481.6
(3)
P 		352
B 284
(-1.6)
P 		191.9
(-3)
P 		225.4
(-2.5)
P 		209.8
(-2.7)
P 		409
(0.2)
P 		596.2
(3)
P 		404
C 159.5
(-3)
P 		271.1
(-1.6)
P 		217.1
(-2.3)
P 		398.2
(0.1)
P 		386.1
(-0.1)
P 		626.2
(3)
P 		467
avr 225.5
(-2.5) 		197.6
(-3) 		234.1
(-2.4) 		276.4
(-1.7) 		380
(-0) 		568
(3) 		370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 87.5
(3)
P 		47.2
(-3)
A 		62.4
(-0.7)
A 		72.7
(0.8)
P 		40
B 64.3
(3)
P 		45.8
(-1.5)
A 		39.7
(-3)
M 		57.6
(1.4)
P 		25
C 65.6
(3)
P 		64.6
(1.9)
A 		60.2
(-3)
A 		61.5
(-1.6)
P 		5
avr 72.5
(3) 		52.5
(-3) 		54.1
(-2.5) 		63.9
(0.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 42.9
(-3)
P 		46.2
(-2.7)
P 		56.6
(-1.9)
P 		56.1
(-1.9)
P 		104.1
(1.9)
P 		117.3
(3)
P 		74
B 98.8
(-1.4)
P 		63.9
(-2.7)
P 		54.7
(-3)
P 		55.6
(-3)
P 		166.2
(1)
P 		222.3
(3)
P 		168
C 59.1
(-2.9)
P 		82.7
(-1.9)
P 		55.3
(-3)
P 		80.1
(-2)
P 		124.9
(-0.3)
P 		209.6
(3)
P 		154
avr 66.9
(-2.5) 		64.3
(-2.6) 		55.5
(-3) 		63.9
(-2.6) 		131.7
(0.6) 		183.1
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172757_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17933
Sequence Type Exemplar sequence
Representative Public ID ZK678.3 NCBI
Target Description ZK678.3 /REP_DB=WormBase Gene ID /WP=CE15387 /TR=Q94412 /GB=CAB01905.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cyclin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078190 NCBI Caenorhabditis elegans ZK678.3 (ZK678.3) mRNA, complete cds. 11/11 None
SNAP00000038617 ENSEMBL cdna:SNAP chromosome:CEL140:X:15748518:15749124:-1 11/11 None
GENEFINDER00000038626 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15748518:15749124:-1 11/11 None
ZK678.3 ENSEMBL cdna:known chromosome:CEL140:X:15748401:15749124:-1 gene:ZK678.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067937 2/11 Cross Hyb Matching Probes A 
NM_064731 2/11 Cross Hyb Matching Probes A 
NM_073820 2/11 Cross Hyb Matching Probes A 
NM_071600 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000019308 1/11 Cross Hyb Matching Probes None
SNAP00000019301 1/11 Cross Hyb Matching Probes None
SNAP00000002425 2/11 Cross Hyb Matching Probes None
GENEFINDER00000017793 3/11 Cross Hyb Matching Probes None
SNAP00000017785 3/11 Cross Hyb Matching Probes None
SNAP00000029927 2/11 Cross Hyb Matching Probes None
SNAP00000014612 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014619 2/11 Cross Hyb Matching Probes None
SNAP00000016557 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020019 2/11 Cross Hyb Matching Probes None
SNAP00000027433 4/11 Cross Hyb Matching Probes None
GENEFINDER00000027446 2/11 Cross Hyb Matching Probes None
SNAP00000010126 3/11 Cross Hyb Matching Probes None
GENEFINDER00000010128 1/11 Cross Hyb Matching Probes None
W02A11.6 2/11 Cross Hyb Matching Probes None
ZK1225.7 3/11 Cross Hyb Matching Probes None
W05G11.2 2/11 Cross Hyb Matching Probes A 
C04C3.4 2/11 Cross Hyb Matching Probes A 
T24A6.1 2/11 Cross Hyb Matching Probes A 
W02F12.1 2/11 Cross Hyb Matching Probes None
T07F10.5 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13232479-13233500(+) 90.24 90.24
chrIII:57693-58724(+) 93.9 93.9
chrII:2018856-2023625(-) 91.26 91.26
chrX:15748400-15749124(-) 100.0 100.0
Public Domain and Genome References
Gene Title cyclin like
Ensembl ZK678.3
Entrez Gene 191393 Entrez gene
SwissProt Q94412 EMBL-EBI
WormBase CE15387 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 2.0E-91
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 8.0E-75
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 1.0E-73
blast AAC71146 Hypothetical protein W05G11.2 [Caenorhabditis elegans] ref|NP_497132.1| W05G11.2 [Caenorhabditis elegans] 1.0E-64
blast AAC71146 Hypothetical protein W05G11.2 [Caenorhabditis elegans] ref|NP_497132.1| W05G11.2 [Caenorhabditis elegans] 2.0E-63
blast AAC71146 Hypothetical protein W05G11.2 [Caenorhabditis elegans] ref|NP_497132.1| W05G11.2 [Caenorhabditis elegans] 4.0E-58
blast CAA82372 Hypothetical protein ZK507.6 [Caenorhabditis elegans] ref|NP_499018.1| ZK507.6 [Caenorhabditis elegans] sp|P34638|CCNA1_CAEEL G2/mitotic-specific cyclin A1 gb|AAA84393.1| cyclin A 2.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 8.6E-6
Sequence
Target Sequence 
>C. ELEGANS:172757_X_AT
cggcggtggcgacaatttccaaaaggaaacatttcatctcgcggtgagcctcgtggatct
tgctctcccaatgttcaatattgataaaatgcgatttcaactggttggatcgacgtcgat
gatgatcacaaaaatacgtggaaatcttcccaccaatcgagtacccgacattcttttgat
ggagcgattcttgattggaaagttcgaatttgtcgtcgctaagcccacaccatcttggct
cggatcatgctttgcaaagagaattaacctcacaaaaaagatgcggaatgatgtcaaact
cctcgagctgtcgccgatagatgctcattttctacgttgccgcccatctgatgctgctca
gagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCGGTGGCGACAATTTCCAAAAG 189 241 45 Antisense
AAACATTTCATCTCGCGGTGAGCCT 48 129 71 Antisense
ATCTTGCTCTCCCAATGTTCAATAT 467 31 101 Antisense
TTCAACTGGTTGGATCGACGTCGAT 690 673 140 Antisense
TGGAAATCTTCCCACCAATCGAGTA 82 547 183 Antisense
GAGTACCCGACATTCTTTTGATGGA 335 399 203 Antisense
TCGAATTTGTCGTCGCTAAGCCCAC 664 599 248 Antisense
CTTGGCTCGGATCATGCTTTGCAAA 519 217 278 Antisense
ATGATGTCAAACTCCTCGAGCTGTC 108 47 332 Antisense
GCTGTCGCCGATAGATGCTCATTTT 485 295 351 Antisense
CGCCCATCTGATGCTGCTCAGAGTC 661 255 385 Antisense
Sequence Source Affymetrix Proprietary Database