[Home] | [Total List]

[172755_x_at]

Description ZK637.7 /REP_DB=WormBase Gene ID /WP=CE00437 /CHR=3 /FEA=Sanger Annotation /DEF=locus:lin-9 (HINXTON) SW:P30630 protein_id:CAA77454.1
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 68      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 91      6grp_total > 69      4grp_total > 63      6grp_highest_sub > Da      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 199.8
(0.3)
P 		155.2
(-2.2)
P 		246.7
(3)
P 		141.8
(-3)
P 		105
B 267.5
(3)
P 		131.4
(-3)
P 		147.7
(-2.3)
P 		145.2
(-2.4)
P 		136
C 287.4
(3)
P 		89.6
(-3)
P 		159.8
(-0.9)
P 		178.1
(-0.3)
P 		198
avr 251.6
(3) 		125.4
(-3) 		184.7
(-0.2) 		155
(-1.6) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 147.4
(-1.5)
P 		148.1
(-1.5)
P 		112.4
(-3)
P 		125.7
(-2.4)
P 		177.5
(-0.2)
P 		254.1
(3)
P 		142
B 118.3
(-3)
P 		161.8
(-0.9)
P 		119.3
(-3)
P 		136
(-2.1)
P 		125.6
(-2.6)
P 		240.7
(3)
P 		122
C 186.9
(-0.6)
P 		142.7
(-1.7)
P 		135.7
(-1.8)
P 		89.8
(-3)
P 		169.9
(-1)
P 		328.7
(3)
P 		239
avr 150.9
(-1.7) 		150.9
(-1.7) 		122.5
(-2.8) 		117.2
(-3) 		157.7
(-1.5) 		274.5
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 72.8
(3)
P 		33.7
(-1.5)
P 		64.5
(2)
P 		20.8
(-3)
P 		52
B 85.3
(3)
P 		32.5
(-2.8)
P 		34.2
(-2.6)
P 		30.9
(-3)
P 		54
C 95.1
(3)
P 		25.8
(-3)
P 		55.7
(-0.4)
P 		30
(-2.6)
P 		69
avr 84.4
(3) 		30.7
(-2.6) 		51.5
(-0.5) 		27.2
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 27.2
(-2.6)
P 		52.7
(1.5)
P 		24.5
(-3)
P 		31.9
(-1.8)
P 		53.6
(1.7)
P 		61.9
(3)
P 		37
B 41.2
(-1.8)
P 		53.9
(-0.5)
P 		29
(-3)
P 		36
(-2.3)
P 		51
(-0.8)
P 		89.7
(3)
P 		61
C 69.3
(0.3)
P 		43.6
(-1.3)
P 		34.5
(-1.9)
P 		18.1
(-3)
P 		55
(-0.6)
P 		110
(3)
P 		92
avr 45.9
(-1.2) 		50.1
(-0.8) 		29.3
(-2.9) 		28.7
(-3) 		53.2
(-0.5) 		87.2
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172755_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7625
Sequence Type Exemplar sequence
Representative Public ID ZK637.7 NCBI
Target Description ZK637.7 /REP_DB=WormBase Gene ID /WP=CE00437 /CHR=3 /FEA=Sanger Annotation /DEF=locus:lin-9 (HINXTON) SW:P30630 protein_id:CAA77454.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027845(10), NM_001027844(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027845 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-9) (lin-9) mRNA, complete cds. 10/11 None
NM_001027844 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-9) (lin-9) mRNA, complete cds. 10/11 None
SNAP00000013205 ENSEMBL cdna:SNAP chromosome:CEL140:III:8900497:8904027:-1 10/11 None
ZK637.7b ENSEMBL cdna:known chromosome:CEL140:III:8900139:8904033:-1 gene:ZK637.7 10/11 A 
ZK637.7a ENSEMBL cdna:known chromosome:CEL140:III:8900139:8904033:-1 gene:ZK637.7 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013229 5/11 Cross Hyb Matching Probes None
GENEFINDER00000013226 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8900492-8904023(-) 98.04 100.0
Public Domain and Genome References
Ensembl ZK637.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42391 Hypothetical protein ZK637.7b [Caenorhabditis elegans] ref|NP_001023016.1| abnormal cell LINeage family member (lin-9) [Caenorhabditis elegans] gb|AAF76192.1| LIN-9L [Caenorhabditis elegans] sp|P30630|LIN9_CAEEL Abnormal cell lineage protein 9 (Lin-9 protein) 0.0
blast CAA77454 Hypothetical protein ZK637.7a [Caenorhabditis elegans] ref|NP_001023015.1| abnormal cell LINeage family member (lin-9) [Caenorhabditis elegans] gb|AAF76193.1| LIN-9S [Caenorhabditis elegans] 0.0
blast S15794 lin-9 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010561 EMBL-EBI DIRP 3.9E-72
Pfam IPR010561 EMBL-EBI DIRP 3.9E-72
Sequence
Target Sequence 
>C. ELEGANS:172755_X_AT
tttcccgctgaaattccttgtgaatcttgtgaaactgacgaaattaattgatatcaaaaa
gggattgatacgacaattgaacgaattgaatgcggatgccgagatacaaaatatgacgtc
agacaaatattcgaaagcttttcaggagaaatacgccaaaactatcatcgatctggaaca
tgtgaatcagaatatagatatcaatatgaatggaattcaagatcaccatatgtatttctc
ttcgaatgatatttcaacgtcaaatatgaaacctgaagcagttagacaaatgtgctctca
acaagctggaagatttgtagagcactgtttgtggcactatagactgcagaataataattt
attaatgaaaaaaaaaattgaaaatgttcgcacaatgggaactcaaaagatctctgcagt
tgatcttcaatcacttggtgacgccatatctgaaattcggaccgctattcacccccgcaa
cgtggcattcttccaagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCGCTGAAATTCCTTGTGAAT 201 671 1263 Antisense
GAACGAATTGAATGCGGATGCCGAG 409 347 1341 Antisense
ATACGCCAAAACTATCATCGATCTG 469 23 1413 Antisense
GATCACCATATGTATTTCTCTTCGA 496 421 1483 Antisense
GACAAATGTGCTCTCAACAAGCTGG 11 365 1547 Antisense
GTAGAGCACTGTTTGTGGCACTATA 478 455 1579 Antisense
ATGGGAACTCAAAAGATCTCTGCAG 202 51 1657 Antisense
ATCTCTGCAGTTGATCTTCAATCAC 493 33 1672 Antisense
AATCACTTGGTGACGCCATATCTGA 261 171 1691 Antisense
CTGAAATTCGGACCGCTATTCACCC 681 235 1712 Antisense
CGCAACGTGGCATTCTTCCAAGACT 15 255 1738 Antisense
Sequence Source Affymetrix Proprietary Database