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[172751_x_at] Neuropeptide anthorfamide

Description M03A1.5_rc /REP_DB=WormBase Gene ID /WP=CE07392 /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) TR:Q21474 protein_id:AAA93432.1
Cluster 6grp_total > 01      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 22
(-0.1)
A 		15.1
(-1.1)
A 		1.3
(-3)
A 		44.8
(3)
A 		44
B 38.8
(3)
A 		5.4
(-3)
A 		11.6
(-1.9)
A 		30
(1.4)
A 		33
C 14.1
(-2)
A 		1.4
(-3)
A 		5.7
(-2.7)
A 		81
(3)
P 		80
avr 25
(-0.5) 		7.3
(-2.9) 		6.2
(-3) 		51.9
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 42.8
(3)
A 		37.6
(2.2)
A 		15.9
(-1.2)
A 		4.5
(-3)
A 		36.1
(2)
A 		22
(-0.3)
A 		38
B 15.3
(-0.9)
A 		18.7
(-0.3)
A 		34.4
(2.3)
A 		9
(-1.9)
A 		38.4
(3)
A 		2.7
(-3)
A 		36
C 4.7
(-2.5)
A 		49.6
(3)
A 		2.4
(-2.7)
A 		2.4
(-2.7)
A 		0.3
(-3)
A 		11.2
(-1.7)
A 		49
avr 20.9
(0.1) 		35.3
(3) 		17.6
(-0.5) 		5.3
(-3) 		24.9
(0.9) 		12
(-1.7) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8
(3)
A 		3.3
(-0.7)
A 		0.4
(-3)
A 		6.6
(1.9)
A 		8
B 12.4
(3)
A 		1.3
(-3)
A 		2.7
(-2.2)
A 		6.4
(-0.2)
A 		11
C 4.7
(-1.1)
A 		0.4
(-3)
A 		2
(-2.3)
A 		13.7
(3)
P 		13
avr 8.4
(2.6) 		1.7
(-3) 		1.7
(-3) 		8.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.9
(0.3)
A 		13.4
(3)
A 		3.5
(-1.8)
A 		1.1
(-3)
A 		10.9
(1.8)
A 		5.4
(-0.9)
A 		12
B 5.3
(-1.2)
A 		6.2
(-0.9)
A 		8.3
(0)
A 		2.4
(-2.4)
A 		15.6
(3)
A 		1
(-3)
A 		15
C 1.8
(-2.3)
A 		15.1
(3)
A 		0.6
(-2.8)
A 		0.5
(-2.8)
A 		0.1
(-3)
A 		3.8
(-1.5)
A 		15
avr 5
(-0.8) 		11.6
(3) 		4.1
(-1.4) 		1.3
(-3) 		8.9
(1.4) 		3.4
(-1.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172751_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28117
Sequence Type Exemplar sequence
Representative Public ID M03A1.5 NCBI
Target Description M03A1.5_rc /REP_DB=WormBase Gene ID /WP=CE07392 /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) TR:Q21474 protein_id:AAA93432.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077120(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077120 NCBI Caenorhabditis elegans C24A3.1 (C24A3.1) mRNA, complete cds. 9/11 A 
C24A3.1 ENSEMBL cdna:known chromosome:CEL140:X:9002417:9008212:1 gene:C24A3.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 1/11 Cross Hyb Matching Probes A 
NM_061393 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042962 8/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 1/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 2/11 Cross Hyb Matching Probes None
SNAP00000029283 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 1/11 Cross Hyb Matching Probes None
T02H6.3 1/11 Cross Hyb Matching Probes A 
Y116A8C.41 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title Neuropeptide anthorfamide
Ensembl C24A3.1
Entrez Gene 182826 Entrez gene
SwissProt Q18126 EMBL-EBI
WormBase CE04058 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81461 Hypothetical protein C24A3.1 [Caenorhabditis elegans] ref|NP_509521.1| C24A3.1 [Caenorhabditis elegans] 0.0
blast CAE57308 Hypothetical protein CBG00230 [Caenorhabditis briggsae] 0.0
blast T29578 hypothetical protein M03A1.5 - Caenorhabditis elegans 2.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.5E-9
Sequence
Target Sequence 
>C. ELEGANS:172751_X_AT
aattccggaatgctccagaaccttctggaaaattcgagaaaattctggaatgttccagaa
ccttctggaaaatccgagaaaattctggaatgttccagaaccttctggaaaatttgagaa
aattctggaatgttccagaaccttctggaaaatccgagaaaattctggaatgttccagaa
ccttctggaaaatttgagaaaattctggaatgttccagaaccttctggaaaatttgagaa
aatgctggaatgttccagaaccttctggaaaatccgagaaaattctggaatgttccagaa
ccttctggaaaatttgagaaaattctggaatgttccagaaccttctggaaaatccgagaa
aattctggaatgttccagaaccttctggaaaatttgagaaaattctggaatgttccagaa
ccttctggaaaatttgagaaaatgctggaatgttccagaaccttctggaaaatttgagaa
aattctggaatgttccagaaccttctggaaaatttgagaaaattctggaatgttccagaa
ccttctggaaaattcgagaaaattcgtggtgagacccttcgtggtgagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCGGAATGCTCCAGAACCTTC 426 175 43 Antisense
TCCGGAATGCTCCAGAACCTTCTGG 495 593 46 Antisense
CAGAACCTTCTGGAAAATTCGAGAA 649 203 58 Antisense
CAGAACCTTCTGGAAAATCCGAGAA 652 203 98 Antisense
GGAATGTTCCAGAACCTTCTGGAAA 117 533 249 Antisense
GCTGGAATGTTCCAGAACCTTCTGG 226 295 286 Antisense
CCAGAACCTTCTGGAAAATCCGAGA 214 273 297 Antisense
TCTGGAATGTTCCAGAACCTTCTGG 42 607 366 Antisense
CTGGAATGTTCCAGAACCTTCTGGA 518 239 567 Antisense
GAAAATTCGTGGTGAGACCCTTCGT 487 347 600 Antisense
TGGTGAGACCCTTCGTGGTGAGACC 536 551 609 Antisense
Sequence Source Affymetrix Proprietary Database