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[172750_x_at]

Description M03A1.4_rc /REP_DB=WormBase Gene ID /WP=CE07391 /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) TR:Q21475 protein_id:AAA93433.1
Cluster 6grp_high1_10_10 > 31      4grp_high_8_8 > 03      6grp_total > 34      4grp_total > 13      6grp_high1_sub > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1014
1 2 3 4 range
A 518.1
(-0.1)
P 		225
(-2.4)
P 		146.5
(-3)
A 		915.9
(3)
P 		769
B 537.8
(3)
P 		241.6
(-2.1)
A 		186
(-3)
P 		522.4
(2.7)
P 		352
C 513.5
(-0.9)
P 		176.7
(-3)
P 		198.2
(-2.9)
P 		1160.4
(3)
P 		984
avr 523.1
(0) 		214.4
(-2.7) 		176.9
(-3) 		866.2
(3) 		689

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 166.3
(-1.1)
A 		178
(-0.9)
P 		399.6
(3)
P 		58.3
(-3)
A 		139.3
(-1.6)
A 		128.3
(-1.8)
P 		341
B 248.3
(1.8)
P 		273.7
(3)
P 		165.4
(-2.1)
M 		157.8
(-2.5)
P 		180.4
(-1.4)
P 		146.8
(-3)
P 		127
C 244.2
(0.1)
P 		383.1
(3)
P 		225
(-0.3)
P 		123.2
(-2.4)
P 		96.1
(-3)
A 		209.2
(-0.6)
P 		287
avr 219.6
(0.9) 		278.3
(3) 		263.3
(2.5) 		113.1
(-3) 		138.6
(-2.1) 		161.4
(-1.2) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 188.7
(3)
P 		48.8
(-2.6)
P 		38.3
(-3)
A 		134.1
(0.8)
P 		150
B 171.5
(3)
P 		59.7
(-2.2)
A 		43.1
(-3)
P 		111.3
(0.2)
P 		128
C 170
(1.9)
P 		50.8
(-3)
P 		69.1
(-2.2)
P 		195.7
(3)
P 		145
avr 176.7
(3) 		53.1
(-2.9) 		50.2
(-3) 		147
(1.6) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 30.7
(-1.7)
A 		63.3
(1)
P 		87
(3)
P 		14.8
(-3)
A 		42
(-0.7)
A 		31.2
(-1.6)
P 		72
B 86.4
(2.4)
P 		91.1
(3)
P 		40.2
(-3)
M 		41.8
(-2.8)
P 		73.3
(0.9)
P 		54.7
(-1.3)
P 		51
C 90.5
(1.3)
P 		116.9
(3)
P 		57.3
(-0.9)
P 		24.8
(-3)
P 		31.1
(-2.6)
A 		70
(-0.1)
P 		92
avr 69.2
(1) 		90.4
(3) 		61.5
(0.3) 		27.1
(-3) 		48.8
(-0.9) 		52
(-0.6) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172750_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28120
Sequence Type Exemplar sequence
Representative Public ID M03A1.4 NCBI
Target Description M03A1.4_rc /REP_DB=WormBase Gene ID /WP=CE07391 /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) TR:Q21475 protein_id:AAA93433.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) M03A1.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M03A1.4 M03A1.4_rc /REP_DB=WormBase Gene ID /WP=CE07391 /CHR=2 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) TR:Q21475 protein_id:AAA93433.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065168 1/11 Cross Hyb Matching Probes A 
SNAP00000003365 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003374 2/11 Cross Hyb Matching Probes None
SNAP00000029285 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011601 1/11 Cross Hyb Matching Probes None
SNAP00000004117 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026632 2/11 Cross Hyb Matching Probes None
GENEFINDER00000027331 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033793 3/11 Cross Hyb Matching Probes None
Y54F10AM.7 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172750_X_AT
cacagaaattttgaattcccgccaaaatttttcacagaaattttgaattcccgccacaat
ttttcacagaaaatttgaatttcccgccaaaacttatgggtctcgccaagatgggtctca
ccacgaagggtctcaccacgaagggtctcaccacgaattttctcgaattttccagaaggt
tctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAGAAATTTTGAATTCCCGCCAA 213 191 14 Antisense
GAATTCCCGCCAAAATTTTTCACAG 133 325 26 Antisense
GAAATTTTGAATTCCCGCCACAATT 302 363 50 Antisense
ATTCCCGCCACAATTTTTCACAGAA 435 9 60 Antisense
CACAGAAAATTTGAATTTCCCGCCA 212 191 78 Antisense
TTCCCGCCAAAACTTATGGGTCTCG 536 695 94 Antisense
TATGGGTCTCGCCAAGATGGGTCTC 328 655 108 Antisense
AGATGGGTCTCACCACGAAGGGTCT 347 65 122 Antisense
CCACGAAGGGTCTCACCACGAATTT 293 1 149 Antisense
GTCTCACCACGAATTTTCTCGAATT 577 469 158 Antisense
TTCTCGAATTTTCCAGAAGGTTCTG 396 691 173 Antisense
Sequence Source Affymetrix Proprietary Database