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[172744_at]

Description K11G9.6 /REP_DB=WormBase Gene ID /WP=CE07379 /GEN=mtl-1 /TR=SW:P17511 /GB=AAB04979.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 69      6grp_total > 75      4grp_total > 02      6grp_highest_sub > In      6grp_cgc > 67      6grp_cgc_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7235
1 2 3 4 range
A 395.3
(-2.7)
P 		125.5
(-3)
P 		125.6
(-3)
P 		5972.8
(3)
P 		5847
B 337.3
(-2.8)
P 		167.6
(-3)
P 		134.8
(-3)
P 		6545.5
(3)
P 		6411
C 424.6
(-2.8)
P 		152.7
(-3)
P 		143.6
(-3)
P 		7360.8
(3)
P 		7217
avr 385.7
(-2.8) 		148.6
(-3) 		134.7
(-3) 		6626.4
(3) 		6492

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3827
1 2 3 4 5 6 range
A 932.7
(-3)
P 		1019.4
(-2.9)
P 		3261.2
(1)
P 		2924.4
(0.4)
P 		1986.9
(-1.2)
P 		4437.7
(3)
P 		3505
B 1030.1
(-2.8)
P 		906.2
(-3)
P 		2875.1
(0.6)
P 		1930.4
(-1.1)
P 		2807.5
(0.5)
P 		4211
(3)
P 		3305
C 1684.6
(-1.6)
P 		784.6
(-3)
P 		2417.4
(-0.4)
P 		2335.6
(-0.6)
P 		3652.9
(1.5)
P 		4611.9
(3)
P 		3827
avr 1215.8
(-2.5) 		903.4
(-3) 		2851.2
(0.3) 		2396.8
(-0.5) 		2815.8
(0.3) 		4420.2
(3) 		3517
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1368
1 2 3 4 range
A 143.9
(-2.2)
P 		27.2
(-3)
P 		32.8
(-3)
P 		874.3
(3)
P 		847
B 107.6
(-2.7)
P 		41.4
(-3)
P 		31.2
(-3)
P 		1394.8
(3)
P 		1364
C 140.6
(-2.5)
P 		43.9
(-3)
P 		50.1
(-3)
P 		1241.1
(3)
P 		1197
avr 130.7
(-2.5) 		37.5
(-3) 		38
(-3) 		1170.1
(3) 		1133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1398
1 2 3 4 5 6 range
A 171.9
(-3)
P 		362.5
(-1.7)
P 		710.2
(0.6)
P 		741.7
(0.8)
P 		599.6
(-0.2)
P 		1080.4
(3)
P 		909
B 358.4
(-2.7)
P 		301.6
(-3)
P 		698.2
(-1.1)
P 		511.3
(-2)
P 		1140.7
(1)
P 		1570.3
(3)
P 		1269
C 624.4
(-1.2)
P 		239.4
(-3)
P 		615.3
(-1.3)
P 		469.7
(-1.9)
P 		1182
(1.3)
P 		1543.9
(3)
P 		1305
avr 384.9
(-2.5) 		301.2
(-3) 		674.6
(-1) 		574.2
(-1.5) 		974.1
(0.7) 		1398.2
(3) 		1097
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172744_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12029
Sequence Type Exemplar sequence
Representative Public ID K11G9.6 NCBI
Target Description K11G9.6 /REP_DB=WormBase Gene ID /WP=CE07379 /GEN=mtl-1 /TR=SW:P17511 /GB=AAB04979.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072295 NCBI Caenorhabditis elegans MeTaLlothionein family member (mtl-1) (mtl-1) mRNA, complete cds. 11/11 None
SNAP00000025347 ENSEMBL cdna:SNAP chromosome:CEL140:V:6694079:6694426:-1 11/11 None
GENEFINDER00000025352 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6694079:6694290:-1 11/11 None
K11G9.6 ENSEMBL cdna:known chromosome:CEL140:V:6693965:6694442:-1 gene:K11G9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6694079-6694427(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mtl-1
Ensembl K11G9.6
Entrez Gene 179060 Entrez gene
SwissProt P17511 EMBL-EBI
WormBase CE07379 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04979 Metallothionein protein 1 [Caenorhabditis elegans] ref|NP_504696.1| MeTaLlothionein family member (mtl-1) [Caenorhabditis elegans] sp|P17511|MT1_CAEEL Metallothionein-I (MT-I) emb|CAA37334.1| metallothionein-I [Caenorhabditis elegans] dbj|BAA04180.1| metallothionein-I [Caenorhabditis elegans] gb|AAA28110.1| metallothionein I 7.0E-42
blast CAE71932 Hypothetical protein CBG18996 [Caenorhabditis briggsae] 3.0E-39
blast AAB04979 Metallothionein protein 1 [Caenorhabditis elegans] ref|NP_504696.1| MeTaLlothionein family member (mtl-1) [Caenorhabditis elegans] sp|P17511|MT1_CAEEL Metallothionein-I (MT-I) emb|CAA37334.1| metallothionein-I [Caenorhabditis elegans] dbj|BAA04180.1| metallothionein-I [Caenorhabditis elegans] gb|AAA28110.1| metallothionein I 1.0E-32
blast CAE71932 Hypothetical protein CBG18996 [Caenorhabditis briggsae] 1.0E-30
blast CAB61028 Hypothetical protein T08G5.10 [Caenorhabditis elegans] ref|NP_506482.1| MeTaLlothionein family member (mtl-2) [Caenorhabditis elegans] sp|P17512|MT2_CAEEL Metallothionein-II (MT-II) (Metallothionein-like protein) (MT-Ce) emb|CAA37335.1| metallothionein-II [Caenorhabditis elegans] dbj|BAA04181.1| metallothionein-II [Caenorhabditis elegans] gb|AAA28118.1| metallothionein-like protein gb|AAA28117.1| metallothionein-like protein gb|AAA28111.1| metallothionein-2 1.0E-16
blast CAB61028 Hypothetical protein T08G5.10 [Caenorhabditis elegans] ref|NP_506482.1| MeTaLlothionein family member (mtl-2) [Caenorhabditis elegans] sp|P17512|MT2_CAEEL Metallothionein-II (MT-II) (Metallothionein-like protein) (MT-Ce) emb|CAA37335.1| metallothionein-II [Caenorhabditis elegans] dbj|BAA04181.1| metallothionein-II [Caenorhabditis elegans] gb|AAA28118.1| metallothionein-like protein gb|AAA28117.1| metallothionein-like protein gb|AAA28111.1| metallothionein-2 9.0E-13
Sequence
Target Sequence 
>C. ELEGANS:172744_AT
atgcaagtgcggagacaaatgtgaatgcagtggagacaagtgttgtgagaagtactgctg
tgaggaggccagtgagaaaaaatgctgtccagctggatgtaagggagactgcaagtgtgc
aaactgtcattgtgcagagcagaagcagtgcggagacaagacccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAAGTGCGGAGACAAATGTGAA 56 43 45 Antisense
GAATGCAGTGGAGACAAGTGTTGTG 355 331 67 Antisense
GTGTTGTGAGAAGTACTGCTGTGAG 515 485 84 Antisense
GTACTGCTGTGAGGAGGCCAGTGAG 425 457 96 Antisense
AGTGAGAAAAAATGCTGTCCAGCTG 344 59 115 Antisense
ATGCTGTCCAGCTGGATGTAAGGGA 152 43 126 Antisense
ATGTAAGGGAGACTGCAAGTGTGCA 91 47 141 Antisense
GCAAGTGTGCAAACTGTCATTGTGC 513 321 155 Antisense
GCAAACTGTCATTGTGCAGAGCAGA 16 319 163 Antisense
TGTGCAGAGCAGAAGCAGTGCGGAG 157 557 175 Antisense
GAAGCAGTGCGGAGACAAGACCCAT 468 339 186 Antisense
Sequence Source Affymetrix Proprietary Database