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[172743_x_at] major sperm protein

Description F58A6.9 /REP_DB=WormBase Gene ID /WP=CE02603 /GB=AAA96205.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=major sperm protein
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 2.3
(-3)
A 		11.5
(-2.8)
A 		5.4
(-2.9)
A 		253.9
(3)
A 		252
B 24.1
(-2.6)
A 		15.9
(-3)
A 		21
(-2.8)
A 		139.9
(3)
M 		124
C 6.3
(-3)
A 		10.1
(-2.9)
A 		5.9
(-3)
A 		248.8
(3)
P 		243
avr 10.9
(-3) 		12.5
(-2.9) 		10.8
(-3) 		214.2
(3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2397
1 2 3 4 5 6 range
A 30.9
(-2.9)
A 		2.6
(-3)
A 		80.8
(-2.8)
A 		210.5
(-2.5)
A 		1528.3
(0.8)
P 		2399.3
(3)
P 		2397
B 15.5
(-3)
A 		47.8
(-2.9)
A 		29.3
(-3)
A 		193.5
(-2.4)
P 		1891
(3)
P 		1867.7
(2.9)
P 		1876
C 3
(-3)
A 		31.9
(-2.9)
A 		11.1
(-3)
A 		122.3
(-2.7)
A 		2221.9
(3)
P 		1948.4
(2.3)
P 		2219
avr 16.5
(-3) 		27.4
(-3) 		40.4
(-2.9) 		175.4
(-2.5) 		1880.4
(2.4) 		2071.8
(3) 		2055
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 0.8
(-3)
A 		2.5
(-2.7)
A 		1.4
(-2.9)
A 		37.2
(3)
A 		36
B 7.7
(-2.1)
A 		3.9
(-3)
A 		4.9
(-2.8)
A 		29.8
(3)
M 		26
C 2.1
(-3)
A 		2.9
(-2.9)
A 		2.1
(-3)
A 		42
(3)
P 		40
avr 3.5
(-2.9) 		3.1
(-2.9) 		2.8
(-3) 		36.3
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 767
1 2 3 4 5 6 range
A 5.7
(-3)
A 		0.9
(-3)
A 		17.6
(-2.8)
A 		53.4
(-2.5)
A 		461.2
(1.7)
P 		584.2
(3)
P 		583
B 5.4
(-3)
A 		15.9
(-2.9)
A 		7.1
(-3)
A 		51.3
(-2.6)
P 		768.3
(3)
P 		696.4
(2.4)
P 		763
C 1.1
(-3)
A 		9.7
(-2.9)
A 		2.8
(-3)
A 		24.6
(-2.8)
A 		719
(3)
P 		652.2
(2.4)
P 		718
avr 4.1
(-3) 		8.8
(-3) 		9.2
(-3) 		43.1
(-2.6) 		649.5
(3) 		644.3
(3) 		645
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172743_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4045
Sequence Type Exemplar sequence
Representative Public ID F58A6.9 NCBI
Target Description F58A6.9 /REP_DB=WormBase Gene ID /WP=CE02603 /GB=AAA96205.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=major sperm protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062559 NCBI Caenorhabditis elegans F58A6.9 (F58A6.9) mRNA, complete cds. 11/11 None
SNAP00000019952 ENSEMBL cdna:SNAP chromosome:CEL140:II:5158622:5158855:-1 11/11 None
GENEFINDER00000019959 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5158622:5158949:-1 11/11 None
F58A6.9 ENSEMBL cdna:known chromosome:CEL140:II:5158396:5158855:-1 gene:F58A6.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062487 3/11 Cross Hyb Matching Probes A 
NM_069433 2/11 Cross Hyb Matching Probes A 
NM_062497 1/11 Cross Hyb Matching Probes A 
NM_068370 2/11 Cross Hyb Matching Probes A 
NM_069448 2/11 Cross Hyb Matching Probes A 
NM_068310 2/11 Cross Hyb Matching Probes A 
NM_068312 1/11 Cross Hyb Matching Probes A 
NM_068313 1/11 Cross Hyb Matching Probes A 
NM_069063 1/11 Cross Hyb Matching Probes A 
NM_062548 3/11 Cross Hyb Matching Probes A 
NM_062558 4/11 Cross Hyb Matching Probes A 
NM_062569 2/11 Cross Hyb Matching Probes A 
NM_062571 2/11 Cross Hyb Matching Probes A 
NM_068351 1/11 Cross Hyb Matching Probes A 
NM_068354 1/11 Cross Hyb Matching Probes A 
NM_062505 3/11 Cross Hyb Matching Probes A 
NM_068359 1/11 Cross Hyb Matching Probes A 
NM_068377 1/11 Cross Hyb Matching Probes A 
NM_068379 2/11 Cross Hyb Matching Probes A 
NM_062490 3/11 Cross Hyb Matching Probes A 
NM_062500 3/11 Cross Hyb Matching Probes A 
NM_062742 1/11 Cross Hyb Matching Probes A 
NM_062743 1/11 Cross Hyb Matching Probes A 
NM_062748 1/11 Cross Hyb Matching Probes A 
NM_062753 1/11 Cross Hyb Matching Probes A 
NM_069321 1/11 Cross Hyb Matching Probes A 
NM_069339 2/11 Cross Hyb Matching Probes A 
NM_069341 1/11 Cross Hyb Matching Probes A 
NM_069358 2/11 Cross Hyb Matching Probes A 
NM_069359 2/11 Cross Hyb Matching Probes A 
NM_069361 2/11 Cross Hyb Matching Probes A 
NM_069380 2/11 Cross Hyb Matching Probes A 
NM_062457 2/11 Cross Hyb Matching Probes A 
NM_062764 1/11 Cross Hyb Matching Probes A 
NM_062464 2/11 Cross Hyb Matching Probes A 
NM_068372 2/11 Cross Hyb Matching Probes A 
SNAP00000024816 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024829 1/11 Cross Hyb Matching Probes None
SNAP00000000807 2/11 Cross Hyb Matching Probes None
SNAP00000000808 2/11 Cross Hyb Matching Probes None
GENEFINDER00000000821 2/11 Cross Hyb Matching Probes None
GENEFINDER00000000824 2/11 Cross Hyb Matching Probes None
SNAP00000007649 2/11 Cross Hyb Matching Probes None
GENEFINDER00000007652 2/11 Cross Hyb Matching Probes None
SNAP00000009139 3/11 Cross Hyb Matching Probes None
GENEFINDER00000009155 3/11 Cross Hyb Matching Probes None
SNAP00000016470 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016484 2/11 Cross Hyb Matching Probes None
SNAP00000019951 4/11 Cross Hyb Matching Probes None
GENEFINDER00000019958 4/11 Cross Hyb Matching Probes None
SNAP00000021327 2/11 Cross Hyb Matching Probes None
SNAP00000021329 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021346 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021348 2/11 Cross Hyb Matching Probes None
SNAP00000031244 1/11 Cross Hyb Matching Probes None
SNAP00000031245 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031253 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031258 1/11 Cross Hyb Matching Probes None
SNAP00000034943 3/11 Cross Hyb Matching Probes None
SNAP00000034948 3/11 Cross Hyb Matching Probes None
GENEFINDER00000034961 3/11 Cross Hyb Matching Probes None
GENEFINDER00000034965 3/11 Cross Hyb Matching Probes None
SNAP00000041369 1/11 Cross Hyb Matching Probes None
SNAP00000041374 1/11 Cross Hyb Matching Probes None
SNAP00000041384 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041386 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041391 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041398 1/11 Cross Hyb Matching Probes None
SNAP00000043868 3/11 Cross Hyb Matching Probes None
SNAP00000043869 3/11 Cross Hyb Matching Probes None
SNAP00000043876 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043883 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043888 3/11 Cross Hyb Matching Probes None
SNAP00000002639 1/11 Cross Hyb Matching Probes None
SNAP00000002641 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002656 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002661 1/11 Cross Hyb Matching Probes None
SNAP00000004243 2/11 Cross Hyb Matching Probes None
SNAP00000004244 2/11 Cross Hyb Matching Probes None
SNAP00000004246 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004263 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004265 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004273 2/11 Cross Hyb Matching Probes None
SNAP00000005864 2/11 Cross Hyb Matching Probes None
GENEFINDER00000005869 2/11 Cross Hyb Matching Probes None
SNAP00000006004 2/11 Cross Hyb Matching Probes None
SNAP00000006006 2/11 Cross Hyb Matching Probes None
SNAP00000006011 2/11 Cross Hyb Matching Probes None
SNAP00000006013 1/11 Cross Hyb Matching Probes None
SNAP00000006015 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006018 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006020 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006021 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006023 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006024 2/11 Cross Hyb Matching Probes None
SNAP00000007231 2/11 Cross Hyb Matching Probes None
GENEFINDER00000007236 2/11 Cross Hyb Matching Probes None
SNAP00000023386 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023395 1/11 Cross Hyb Matching Probes None
SNAP00000029404 1/11 Cross Hyb Matching Probes None
SNAP00000029405 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029413 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029416 1/11 Cross Hyb Matching Probes None
SNAP00000029847 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029849 1/11 Cross Hyb Matching Probes None
SNAP00000034129 1/11 Cross Hyb Matching Probes None
SNAP00000034134 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034137 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034140 1/11 Cross Hyb Matching Probes None
SNAP00000040132 1/11 Cross Hyb Matching Probes None
SNAP00000040134 2/11 Cross Hyb Matching Probes None
GENEFINDER00000040145 2/11 Cross Hyb Matching Probes None
SNAP00000041533 2/11 Cross Hyb Matching Probes None
GENEFINDER00000041543 2/11 Cross Hyb Matching Probes None
SNAP00000043472 2/11 Cross Hyb Matching Probes None
SNAP00000043475 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043484 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043489 1/11 Cross Hyb Matching Probes None
SNAP00000043994 1/11 Cross Hyb Matching Probes None
GENEFINDER00000044007 1/11 Cross Hyb Matching Probes None
F26G1.7 2/11 Cross Hyb Matching Probes A 
F26G1.8 2/11 Cross Hyb Matching Probes None
C33F10.9 2/11 Cross Hyb Matching Probes A 
R05F9.8 3/11 Cross Hyb Matching Probes A 
R05F9.3 3/11 Cross Hyb Matching Probes R A 
R05F9.13 1/11 Cross Hyb Matching Probes A 
ZK546.6 3/11 Cross Hyb Matching Probes A 
ZK546.3 3/11 Cross Hyb Matching Probes A 
F59A6.8 2/11 Cross Hyb Matching Probes None
F09C12.7 3/11 Cross Hyb Matching Probes A 
F58A6.8 4/11 Cross Hyb Matching Probes A 
C34F11.6 2/11 Cross Hyb Matching Probes A 
C34F11.4 2/11 Cross Hyb Matching Probes A 
K05F1.7 1/11 Cross Hyb Matching Probes A 
K05F1.2 1/11 Cross Hyb Matching Probes A 
ZK1248.6 1/11 Cross Hyb Matching Probes A 
ZK1248.4 1/11 Cross Hyb Matching Probes A 
ZK1248.17 1/11 Cross Hyb Matching Probes A 
C09B9.6 2/11 Cross Hyb Matching Probes A 
R13H9.2 1/11 Cross Hyb Matching Probes A 
R13H9.4 1/11 Cross Hyb Matching Probes A 
Y59E9AR.7 1/11 Cross Hyb Matching Probes A 
Y59E9AR.1 1/11 Cross Hyb Matching Probes A 
F36H12.7 1/11 Cross Hyb Matching Probes A 
F36H12.6 2/11 Cross Hyb Matching Probes None
ZK354.5 2/11 Cross Hyb Matching Probes A 
ZK354.4 2/11 Cross Hyb Matching Probes A 
ZK354.10 2/11 Cross Hyb Matching Probes None
ZK354.11 1/11 Cross Hyb Matching Probes A 
ZK354.1 2/11 Cross Hyb Matching Probes A 
Y59H11AM.1 1/11 Cross Hyb Matching Probes A 
ZK1251.6 1/11 Cross Hyb Matching Probes A 
T13F2.10 2/11 Cross Hyb Matching Probes A 
T13F2.11 1/11 Cross Hyb Matching Probes A 
W08D2.9 1/11 Cross Hyb Matching Probes None
K07F5.1 2/11 Cross Hyb Matching Probes A 
K07F5.2 2/11 Cross Hyb Matching Probes A 
K07F5.3 2/11 Cross Hyb Matching Probes A 
F32B6.6 2/11 Cross Hyb Matching Probes A 
C04G2.3 1/11 Cross Hyb Matching Probes None
C04G2.4 2/11 Cross Hyb Matching Probes A 
K08F4.8 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5194493-5194727(+) 92.31 92.31
chrII:4825549-4825783(+) 91.88 91.88
chrII:4898938-4899172(+) 91.88 91.88
chrII:5199924-5200158(+) 91.88 91.88
chrII:4940031-4940265(+) 91.45 91.45
chrII:4933159-4933393(+) 91.45 91.45
chrIV:5265682-5265916(+) 91.03 91.03
chrIV:5316667-5316901(+) 91.03 91.03
chrIV:9894758-9894992(+) 91.03 91.03
chrIV:5298106-5298448(+) 91.03 91.03
chrIV:5260733-5308821(+) 91.03 91.03
chrIV:9841668-10093457(+) 90.6 90.6
chrII:5158619-5158853(-) 100.0 100.0
chrII:4892294-4892528(-) 92.31 92.31
chrII:4916162-4916396(-) 91.03 91.03
chrII:5115081-5115315(-) 91.03 91.03
chrIV:9766750-9766984(-) 91.03 91.03
chrIV:9836013-9836247(-) 90.17 90.17
chrIV:9832467-10143567(-) 90.6 90.6
Public Domain and Genome References
Gene Title major sperm protein
Ensembl F58A6.9
Entrez Gene 173885 Entrez gene
SwissProt Q95PJ7 EMBL-EBI
WormBase CE02603 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60826 Hypothetical protein Y59E9AR.7 [Caenorhabditis elegans] gb|AAF60828.1| Hypothetical protein Y59E9AR.1 [Caenorhabditis elegans] ref|NP_500755.1| Y59E9AR.1 [Caenorhabditis elegans] ref|NP_500752.1| Y59E9AR.7 [Caenorhabditis elegans] 4.0E-60
blast AAA85761 Major sperm protein protein 50 [Caenorhabditis elegans] emb|CAA94282.1| Hypothetical protein K07F5.1 [Caenorhabditis elegans] gb|AAK85493.1| Major sperm protein protein 53 [Caenorhabditis elegans] gb|AAB42254.1| Major sperm protein protein 51 [Caenorhabditis elegans] gb|AAB42255.1| Major sperm protein protein 113 [Caenorhabditis elegans] gb|AAB42253.1| Major sperm protein protein 59 [Caenorhabditis elegans] gb|AAB42256.1| Major sperm protein protein 65 [Caenorhabditis elegans] gb|AAC71087.1| Major sperm protein protein 64 [Caenorhabditis elegans] gb|AAA68711.1| Major sperm protein protein 142 [Caenorhabditis elegans] gb|AAA96204.1| Major sperm protein protein 45 [Caenorhabditis elegans] gb|AAC26926.1| Major sperm protein protein 19 [Caenorhabditis elegans] ref|NP_500773.1| Major Sperm Protein family member (msp-113) [Caenorhabditis elegans] ref|NP_500771.1| Major Sperm Protein family member (msp-51) [Caenorhabditis elegans] ref|NP_501759.1| Major Sperm Protein family member (msp-81) [Caenorhabditis elegans] ref|NP_500780.1| Major Sperm Protein family member (msp-65) [Caenorhabditis elegans] ref|NP_500778.1| Major Sperm Protein family member (msp-59) [Caenorhabditis elegans] ref|NP_500760.1| Major Sperm Protein family member (msp-19) [Caenorhabditis elegans] ref|NP_500714.1| Major Sperm Protein family member (msp-53) [Caenorhabditis elegans] ref|NP_495149.1| Major Sperm Protein family member (msp-64) [Caenorhabditis elegans] ref|NP_495144.1| Major Sperm Protein family member (msp-142) [Caenorhabditis elegans] ref|NP_494972.1| Major Sperm Protein family member (msp-50) [Caenorhabditis elegans] ref|NP_494959.1| Major Sperm Protein family member (msp-45) [Caenorhabditis elegans] ref|NP_494898.1| Major Sperm Protein family member (msp-31) [Caenorhabditis elegans] ref|NP_494865.1| Major Sperm Protein family member (msp-40) [Caenorhabditis elegans] gb|AAK31477.1| Major sperm protein protein 40 [Caenorhabditis elegans] gb|AAA83175.1| Major sperm protein protein 31 [Caenorhabditis elegans] sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142 (MSP) 4.0E-60
blast AAA68739 Major sperm protein protein 152 [Caenorhabditis elegans] ref|NP_494901.1| Major Sperm Protein family member (msp-152) [Caenorhabditis elegans] sp|Q23519|MS152_CAEEL Major sperm protein 152 (MSP) 4.0E-60
blast AAF60826 Hypothetical protein Y59E9AR.7 [Caenorhabditis elegans] gb|AAF60828.1| Hypothetical protein Y59E9AR.1 [Caenorhabditis elegans] ref|NP_500755.1| Y59E9AR.1 [Caenorhabditis elegans] ref|NP_500752.1| Y59E9AR.7 [Caenorhabditis elegans] 1.0E-40
blast AAA68346 Major sperm protein protein 74 [Caenorhabditis elegans] gb|AAC71085.1| Hypothetical protein ZK1248.4 [Caenorhabditis elegans] gb|AAA96205.1| Hypothetical protein F58A6.9 [Caenorhabditis elegans] ref|NP_495154.1| ZK1248.4 [Caenorhabditis elegans] ref|NP_494960.1| F58A6.9 [Caenorhabditis elegans] ref|NP_494949.1| Major Sperm Protein family member (msp-74) [Caenorhabditis elegans] 1.0E-40
blast AAA68714 Major sperm protein protein 63 [Caenorhabditis elegans] ref|NP_495143.1| Major Sperm Protein fami