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[172740_x_at] chitinase

Description C08H9.11 /REP_DB=WormBase Gene ID /WP=CE02996 /TR=Q17835 /GB=CAA91148.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 03      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 47.9
(0.3)
M 		26.8
(-3)
A 		28.3
(-2.8)
A 		65.1
(3)
A 		38
B 51.1
(3)
P 		5.2
(-3)
A 		6.9
(-2.8)
A 		25.5
(-0.3)
A 		46
C 54.4
(3)
A 		22.4
(-2.4)
A 		18.9
(-3)
A 		36.9
(0)
A 		36
avr 51.1
(3) 		18.1
(-3) 		18
(-3) 		42.5
(1.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 58.4
(3)
A 		49.2
(2)
A 		57.3
(2.9)
P 		25.6
(-0.5)
A 		56.7
(2.8)
A 		1.5
(-3)
A 		57
B 48.2
(2)
A 		38.4
(0.9)
A 		27.9
(-0.2)
A 		57.9
(3)
A 		27
(-0.3)
A 		1.4
(-3)
A 		57
C 37.4
(0.6)
A 		60
(3)
P 		28.5
(-0.4)
A 		3.8
(-3)
A 		35.4
(0.4)
A 		9.5
(-2.4)
A 		56
avr 48
(2.8) 		49.2
(3) 		37.9
(1.5) 		29.1
(0.3) 		39.7
(1.7) 		4.1
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.4
(3)
M 		5.8
(-3)
A 		7.4
(-2.2)
A 		9.5
(-1.1)
A 		12
B 16.3
(3)
P 		1.3
(-3)
A 		1.6
(-2.9)
A 		5.4
(-1.4)
A 		15
C 18
(3)
A 		6.4
(-2.9)
A 		6.6
(-2.8)
A 		6.2
(-3)
A 		12
avr 17.2
(3) 		4.5
(-3) 		5.2
(-2.7) 		7
(-1.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.8
(0.6)
A 		17.5
(3)
A 		12.5
(1.2)
P 		6.5
(-0.9)
A 		17.1
(2.9)
A 		0.4
(-3)
A 		17
B 16.8
(3)
A 		12.8
(1.5)
A 		6.8
(-0.7)
A 		15.3
(2.4)
A 		11
(0.9)
A 		0.5
(-3)
A 		16
C 13.9
(1.5)
A 		18.3
(3)
P 		7.3
(-0.8)
A 		0.8
(-3)
A 		11.4
(0.6)
A 		3.2
(-2.2)
A 		18
avr 13.8
(2) 		16.2
(3) 		8.9
(0) 		7.5
(-0.5) 		13.2
(1.8) 		1.4
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172740_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3599
Sequence Type Exemplar sequence
Representative Public ID C08H9.11 NCBI
Target Description C08H9.11 /REP_DB=WormBase Gene ID /WP=CE02996 /TR=Q17835 /GB=CAA91148.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063726 NCBI Caenorhabditis elegans C08H9.11 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000001369 ENSEMBL cdna:SNAP chromosome:CEL140:II:9858021:9859007:-1 11/11 None
GENEFINDER00000001390 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9852296:9866384:-1 10/11 None
C08H9.11 ENSEMBL cdna:known chromosome:CEL140:II:9858021:9859542:-1 gene:C08H9.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063721 1/11 Cross Hyb Matching Probes A 
NM_063725 2/11 Cross Hyb Matching Probes A 
SNAP00000001368 2/11 Cross Hyb Matching Probes None
SNAP00000001371 2/11 Cross Hyb Matching Probes None
SNAP00000001372 1/11 Cross Hyb Matching Probes None
SNAP00000044679 1/11 Cross Hyb Matching Probes None
GENEFINDER00000044690 1/11 Cross Hyb Matching Probes None
ZK938.6 1/11 Cross Hyb Matching Probes A 
C08H9.12 2/11 Cross Hyb Matching Probes A 
C08H9.9 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9858017-9859539(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
Ensembl C08H9.11
Entrez Gene 182435 Entrez gene
SwissProt Q17835 EMBL-EBI
WormBase CE02996 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91148 Hypothetical protein C08H9.11 [Caenorhabditis elegans] ref|NP_496127.1| C08H9.11 [Caenorhabditis elegans] 0.0
blast CAA91150 Hypothetical protein C08H9.7 [Caenorhabditis elegans] ref|NP_496128.1| C08H9.7 [Caenorhabditis elegans] 0.0
blast CAA91147 Hypothetical protein C08H9.10 [Caenorhabditis elegans] ref|NP_496125.1| C08H9.10 [Caenorhabditis elegans] 0.0
blast CAA91149 Hypothetical protein C08H9.12 [Caenorhabditis elegans] ref|NP_496126.1| C08H9.12 [Caenorhabditis elegans] 0.0
blast CAA91147 Hypothetical protein C08H9.10 [Caenorhabditis elegans] ref|NP_496125.1| C08H9.10 [Caenorhabditis elegans] 1.0E-177
blast CAA91148 Hypothetical protein C08H9.11 [Caenorhabditis elegans] ref|NP_496127.1| C08H9.11 [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.4E-85
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.5E-10
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.4E-4
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 9.6E-62
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.9E-14
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.1E-18
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.4E-34
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 7.6E-22
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.9E-74
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.8E-93
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 5.7E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496127.1 1 31-53
C08H9.11 1 31-53
GENEFINDER00000001390 7 42-64,253-275,594-616,859-881,1214-1236,1628-1650,2060-2082
Sequence
Target Sequence 
>C. ELEGANS:172740_X_AT
aaagagaaacactggtcattcgatttgaaagatttttcaaagtttgttgactttttcaat
atttattcaacacagtttcgagaaaaacaagtgggacctgattcaccattgtatggagga
gaaggtagaaacatcgatgagacaatgaagtattatatttgtaaaactgggcagccaagt
aaatttaatataatggtttcgttccacggaacattttgggaaggagccgaattaccatta
cgtgattattctgatgatatatggaaggagaaaaacgtggcacgaggaccatttgcagta
cgatggagacatctacgtcaacgtaactggaacctgaccgatattaaatttcacaattta
acgaaaacctcatatatttggattcctggtccacctacctggtttttgactttagaagac
gaaaaaagtttgagagaaaaaaatcgatatgttgctgatcataatattggaggaataacc
atgtggacaattgatcaggatgatgatgatcacactcttttaaaagttgtatcttctgct
gaattatgcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGAGAAACACTGGTCATTCGATT 336 123 802 Antisense
GGGACCTGATTCACCATTGTATGGA 303 495 894 Antisense
TAATATAATGGTTTCGTTCCACGGA 542 635 987 Antisense
GGAACATTTTGGGAAGGAGCCGAAT 436 525 1009 Antisense
GGAGCCGAATTACCATTACGTGATT 140 521 1024 Antisense
AAACGTGGCACGAGGACCATTTGCA 291 127 1074 Antisense
CACGAGGACCATTTGCAGTACGATG 546 195 1082 Antisense
GGAGACATCTACGTCAACGTAACTG 439 517 1106 Antisense
AACGTAACTGGAACCTGACCGATAT 259 143 1121 Antisense
ATATTTGGATTCCTGGTCCACCTAC 330 19 1175 Antisense
GTATCTTCTGCTGAATTATGCACTG 224 455 1330 Antisense
Sequence Source Affymetrix Proprietary Database