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[172728_x_at]

Description C38C10.4 /REP_DB=WormBase Gene ID /WP=CE00107 /GEN=ags-3.3 /TR=SW:Q03569 /GB=CAA79548.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_high_8_8 > 54      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 57      6grp_highest_sub > Da      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 405.2
(-1.5)
P 		548.1
(1.5)
P 		619.8
(3)
P 		331.2
(-3)
M 		289
B 310.3
(-2.2)
P 		514.9
(2.1)
P 		557.7
(3)
P 		270.7
(-3)
P 		287
C 345.5
(-2.8)
P 		473.1
(0.5)
P 		568.4
(3)
P 		337.7
(-3)
P 		231
avr 353.7
(-2.1) 		512
(1.4) 		582
(3) 		313.2
(-3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 465.6
(-0.5)
P 		310.4
(-3)
P 		392.8
(-1.7)
P 		396.4
(-1.6)
P 		547.8
(0.8)
P 		686.7
(3)
P 		376
B 474.7
(-0.9)
P 		315.8
(-3)
P 		335.3
(-2.7)
P 		524.4
(-0.3)
P 		448.9
(-1.3)
P 		774.1
(3)
P 		458
C 365
(-2.5)
P 		321.9
(-3)
P 		341
(-2.8)
P 		446.5
(-1.5)
P 		406.5
(-2)
P 		815.9
(3)
P 		494
avr 435.1
(-1.4) 		316
(-3) 		356.4
(-2.5) 		455.8
(-1.1) 		467.7
(-0.9) 		758.9
(3) 		443
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 147.5
(2.2)
P 		119
(0.7)
P 		162
(3)
P 		48.5
(-3)
M 		114
B 99
(0.5)
P 		127.2
(2.8)
P 		129.2
(3)
P 		57.7
(-3)
P 		72
C 114.4
(-0.6)
P 		136
(0.4)
P 		198.1
(3)
P 		56.9
(-3)
P 		141
avr 120.3
(0.6) 		127.4
(1) 		163.1
(3) 		54.4
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 85.8
(-3)
P 		110.4
(-1.2)
P 		85.5
(-3)
P 		100.5
(-1.9)
P 		165.3
(2.9)
P 		167.2
(3)
P 		82
B 165.2
(-0.6)
P 		105.1
(-2.3)
P 		81.4
(-3)
P 		138.9
(-1.3)
P 		182.4
(-0.1)
P 		288.6
(3)
P 		207
C 135.3
(-1.4)
P 		98.2
(-2.6)
P 		86.8
(-3)
P 		89.8
(-2.9)
P 		131.5
(-1.6)
P 		273.1
(3)
P 		186
avr 128.8
(-1.3) 		104.6
(-2.2) 		84.6
(-3) 		109.7
(-2) 		159.7
(-0.2) 		243
(3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172728_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6153
Sequence Type Exemplar sequence
Representative Public ID C38C10.4 NCBI
Target Description C38C10.4 /REP_DB=WormBase Gene ID /WP=CE00107 /GEN=ags-3.3 /TR=SW:Q03569 /GB=CAA79548.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066665(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066665 NCBI Caenorhabditis elegans G Protein Regulator family member (gpr-2) (gpr-2) mRNA, complete cds. 11/11 A 
SNAP00000012406 ENSEMBL cdna:SNAP chromosome:CEL140:III:9391305:9393037:-1 11/11 None
GENEFINDER00000012412 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9391305:9393037:-1 11/11 None
C38C10.4 ENSEMBL cdna:known chromosome:CEL140:III:9391290:9393062:-1 gene:C38C10.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066499 8/11 Cross Hyb Matching Probes A 
SNAP00000003831 8/11 Cross Hyb Matching Probes None
GENEFINDER00000003840 8/11 Cross Hyb Matching Probes None
F22B7.13 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8628854-8630585(+) 97.78 97.78
chrIII:9391300-9393033(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gpr-2
Ensembl C38C10.4
Entrez Gene 176318 Entrez gene
SwissProt Q03569 EMBL-EBI
WormBase CE00107 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5096 GTPase activator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA79548 Hypothetical protein C38C10.4 [Caenorhabditis elegans] ref|NP_499066.1| G Protein Regulator family member (gpr-2) [Caenorhabditis elegans] sp|Q03569|GPR2_CAEEL G-protein regulator 0.0
blast AAK68341 G protein regulator protein 1 [Caenorhabditis elegans] ref|NP_498900.1| G Protein Regulator family member (gpr-1) [Caenorhabditis elegans] sp|Q95QJ7|GPR1_CAEEL G-protein regulator 0.0
blast CAE65224 Hypothetical protein CBG10100 [Caenorhabditis briggsae] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR003109 EMBL-EBI GoLoco 1.6E-9
Sequence
Target Sequence 
>C. ELEGANS:172728_X_AT
agctgcttattttatcatcttggggagtgttctgaccatcaaccaaagcagtttcaaact
gttctacgagcagatcgacgtggcgatgaatcaagagagaagcgaaacggcaactgatca
agatgcatgcctcgcaattgattcgtctcctgatccgacatcctcgaatgacatgattaa
taagttcgtcgtcaaactggagcacgcaacaaatgttgaaacctgggaaatgattgtcaa
cggaatcattgaagaccagaagaaaccagtagcgatcgaaaagaaagagaacgaggaacc
cgtagacatgatggatctcattttcagtatgagctcgcgtatggatgatcagagaactga
actgtctgctgccagattcattccgcctcgtccagtgtcatcggcatcgaaaaagactac
aaagagccacagaattctccctggactccgtgccaattggacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGCTTATTTTATCATCTTGGGG 148 81 984 Antisense
TGGGGAGTGTTCTGACCATCAACCA 613 553 1004 Antisense
GTTCTACGAGCAGATCGACGTGGCG 648 443 1044 Antisense
GATGCATGCCTCGCAATTGATTCGT 668 411 1105 Antisense
CTGATCCGACATCCTCGAATGACAT 613 237 1133 Antisense
GTTCGTCGTCAAACTGGAGCACGCA 467 441 1167 Antisense
GGAACCCGTAGACATGATGGATCTC 277 531 1278 Antisense
AACTGTCTGCTGCCAGATTCATTCC 626 141 1343 Antisense
TCGTCCAGTGTCATCGGCATCGAAA 533 605 1371 Antisense
AAAGAGCCACAGAATTCTCCCTGGA 275 123 1404 Antisense
CTGGACTCCGTGCCAATTGGACAAA 331 241 1424 Antisense
Sequence Source Affymetrix Proprietary Database