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[172726_x_at] collagen /// collagen

Description F55C10.2 /REP_DB=WormBase Gene ID /WP=CE05952 /TR=Q20805 /GB=CAA98486.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=collagen
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 09      6grp_total > 32      4grp_total > 60      6grp_cgc > 70      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37121
1 2 3 4 range
A 27369.8
(1)
P 		37786
(2.7)
P 		39555.7
(3)
P 		2435.9
(-3)
P 		37120
B 29450.7
(2)
P 		28135.3
(1.7)
P 		34927.9
(3)
P 		2662.5
(-3)
P 		32265
C 25065.5
(2.6)
P 		26508.6
(3)
P 		26686.3
(3)
P 		2434.9
(-3)
P 		24251
avr 27295.3
(1.8) 		30810
(2.4) 		33723.3
(3) 		2511.1
(-3) 		31212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20697
1 2 3 4 5 6 range
A 35349.1
(2.6)
P 		28405
(0.2)
P 		36572.3
(3)
P 		29624.2
(0.6)
P 		21864.9
(-2.1)
P 		19251.1
(-3)
P 		17321
B 28514
(2.1)
P 		27449.8
(1.7)
P 		30635.7
(3)
P 		27477.5
(1.7)
P 		20024.1
(-1.4)
P 		16134.1
(-3)
P 		14502
C 27209.7
(1.7)
P 		28609.2
(2.2)
P 		30486.3
(3)
P 		23879.5
(0.3)
P 		22010.6
(-0.5)
P 		15875.1
(-3)
P 		14611
avr 30357.6
(2.1) 		28154.7
(1.3) 		32564.8
(3) 		26993.7
(0.8) 		21299.9
(-1.4) 		17086.8
(-3) 		15478
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9984
1 2 3 4 range
A 9965.3
(2.8)
P 		8202.3
(1.7)
P 		10340.6
(3)
P 		356.6
(-3)
P 		9984
B 9391.6
(3)
P 		6948.8
(1.3)
P 		8093.6
(2.1)
P 		567.4
(-3)
P 		8824
C 8297.4
(2.3)
P 		7621.4
(1.9)
P 		9301
(3)
P 		410.6
(-3)
P 		8890
avr 9218.1
(3) 		7590.8
(1.9) 		9245.1
(3) 		444.9
(-3) 		8800

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5415
1 2 3 4 5 6 range
A 6516.3
(-1)
P 		10102.2
(3)
P 		7964.7
(0.6)
P 		7513.4
(0.1)
P 		6597.9
(-0.9)
P 		4687
(-3)
P 		5415
B 9921.5
(3)
P 		9136.9
(1.8)
P 		7439.3
(-0.8)
P 		7277.8
(-1.1)
P 		8135.5
(0.3)
P 		6016.3
(-3)
P 		3905
C 10085.5
(3)
P 		8729.5
(1.5)
P 		7759.3
(0.4)
P 		4802.2
(-3)
P 		7122.3
(-0.4)
P 		5314.3
(-2.4)
P 		5283
avr 8841.1
(2.3) 		9322.9
(3) 		7721.1
(0.6) 		6531.1
(-1.2) 		7285.2
(-0.1) 		5339.2
(-3) 		3984
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172726_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12994
Sequence Type Exemplar sequence
Representative Public ID F55C10.2 NCBI
Target Description F55C10.2 /REP_DB=WormBase Gene ID /WP=CE05952 /TR=Q20805 /GB=CAA98486.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=collagen
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073485(11), NM_073487(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073485 NCBI Caenorhabditis elegans F55C10.2 (collagen) mRNA, complete cds. 11/11 A 
NM_073487 NCBI Caenorhabditis elegans F55C10.3 (collagen) mRNA, complete cds. 10/11 A 
SNAP00000017929 ENSEMBL cdna:SNAP chromosome:CEL140:V:11387965:11388931:1 11/11 None
SNAP00000017931 ENSEMBL cdna:SNAP chromosome:CEL140:V:11391478:11392215:-1 10/11 None
GENEFINDER00000017933 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11387965:11388931:1 11/11 None
F55C10.2 ENSEMBL cdna:known chromosome:CEL140:V:11387948:11388958:1 gene:F55C10.2 11/11 A 
F55C10.3 ENSEMBL cdna:known chromosome:CEL140:V:11391478:11392345:-1 gene:F55C10.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061259 1/11 Cross Hyb Matching Probes A 
NM_073276 1/11 Cross Hyb Matching Probes A 
NM_073277 1/11 Cross Hyb Matching Probes A 
NM_059685 1/11 Cross Hyb Matching Probes A 
NM_059689 1/11 Cross Hyb Matching Probes A 
NM_063960 1/11 Cross Hyb Matching Probes A 
NM_058687 1/11 Cross Hyb Matching Probes A 
NM_069466 2/11 Cross Hyb Matching Probes A 
NM_066413 1/11 Cross Hyb Matching Probes None
NM_069125 1/11 Cross Hyb Matching Probes A 
NM_069126 1/11 Cross Hyb Matching Probes A 
NM_069896 2/11 Cross Hyb Matching Probes A 
NM_071851 2/11 Cross Hyb Matching Probes A 
NM_072337 2/11 Cross Hyb Matching Probes A 
NM_072973 1/11 Cross Hyb Matching Probes A 
NM_072974 1/11 Cross Hyb Matching Probes None
NM_072975 1/11 Cross Hyb Matching Probes None
NM_073512 7/11 Cross Hyb Matching Probes A 
NM_070299 2/11 Cross Hyb Matching Probes A 
NM_073083 1/11 Cross Hyb Matching Probes A 
NM_067299 1/11 Cross Hyb Matching Probes A 
NM_062479 1/11 Cross Hyb Matching Probes A 
NM_067302 1/11 Cross Hyb Matching Probes A 
NM_063358 1/11 Cross Hyb Matching Probes A 
NM_058794 2/11 Cross Hyb Matching Probes None
NM_077468 1/11 Cross Hyb Matching Probes A 
NM_077469 1/11 Cross Hyb Matching Probes A 
NM_073899 1/11 Cross Hyb Matching Probes A 
NM_073501 1/11 Cross Hyb Matching Probes A 
NM_073933 1/11 Cross Hyb Matching Probes A 
NM_069299 2/11 Cross Hyb Matching Probes A 
NM_072335 2/11 Cross Hyb Matching Probes A 
NM_069706 1/11 Cross Hyb Matching Probes A 
NM_068118 2/11 Cross Hyb Matching Probes A 
NM_077154 1/11 Cross Hyb Matching Probes None
NM_067737 2/11 Cross Hyb Matching Probes A 
NM_072124 1/11 Cross Hyb Matching Probes A 
NM_171361 1/11 Cross Hyb Matching Probes None
NM_077559 1/11 Cross Hyb Matching Probes A 
NM_069777 1/11 Cross Hyb Matching Probes A 
NM_063908 1/11 Cross Hyb Matching Probes A 
NM_063909 1/11 Cross Hyb Matching Probes A 
NM_062477 1/11 Cross Hyb Matching Probes None
NM_073652 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000007975 1/11 Cross Hyb Matching Probes None
SNAP00000007970 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007974 1/11 Cross Hyb Matching Probes None
SNAP00000038907 2/11 Cross Hyb Matching Probes None
GENEFINDER00000038912 2/11 Cross Hyb Matching Probes None
GENEFINDER00000040901 1/11 Cross Hyb Matching Probes None
SNAP00000040894 1/11 Cross Hyb Matching Probes None
SNAP00000004358 1/11 Cross Hyb Matching Probes None
SNAP00000005486 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005502 1/11 Cross Hyb Matching Probes None
SNAP00000014220 2/11 Cross Hyb Matching Probes None
SNAP00000014221 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014231 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014237 1/11 Cross Hyb Matching Probes None
SNAP00000020588 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020591 1/11 Cross Hyb Matching Probes None
SNAP00000020968 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020971 1/11 Cross Hyb Matching Probes None
SNAP00000026473 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026484 1/11 Cross Hyb Matching Probes None
SNAP00000034887 1/11 Cross Hyb Matching Probes None
SNAP00000035101 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035107 1/11 Cross Hyb Matching Probes None
SNAP00000000290 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000294 1/11 Cross Hyb Matching Probes None
SNAP00000005654 1/11 Cross Hyb Matching Probes None
SNAP00000005655 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005663 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005664 1/11 Cross Hyb Matching Probes None
SNAP00000017748 2/11 Cross Hyb Matching Probes None
GENEFINDER00000017752 2/11 Cross Hyb Matching Probes None
SNAP00000023158 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023159 2/11 Cross Hyb Matching Probes None
SNAP00000023282 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023293 2/11 Cross Hyb Matching Probes None
SNAP00000024853 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024861 1/11 Cross Hyb Matching Probes None
SNAP00000032051 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032086 2/11 Cross Hyb Matching Probes None
SNAP00000033943 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033946 3/11 Cross Hyb Matching Probes None
SNAP00000035582 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035589 2/11 Cross Hyb Matching Probes None
SNAP00000037122 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037126 1/11 Cross Hyb Matching Probes None
SNAP00000043526 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043530 2/11 Cross Hyb Matching Probes None
SNAP00000043808 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043818 1/11 Cross Hyb Matching Probes None
SNAP00000002816 1/11 Cross Hyb Matching Probes None
SNAP00000002817 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002822 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002824 1/11 Cross Hyb Matching Probes None
SNAP00000007006 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007015 1/11 Cross Hyb Matching Probes None
SNAP00000007440 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007452 1/11 Cross Hyb Matching Probes None
SNAP00000011265 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011290 1/11 Cross Hyb Matching Probes None
SNAP00000011428 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011431 1/11 Cross Hyb Matching Probes None
SNAP00000013927 7/11 Cross Hyb Matching Probes None
GENEFINDER00000013944 7/11 Cross Hyb Matching Probes None
SNAP00000018332 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018334 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023019 1/11 Cross Hyb Matching Probes None
SNAP00000023063 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023069 2/11 Cross Hyb Matching Probes None
SNAP00000035388 2/11 Cross Hyb Matching Probes None
SNAP00000035390 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035395 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035407 2/11 Cross Hyb Matching Probes None
SNAP00000039737 1/11 Cross Hyb Matching Probes None
SNAP00000004400 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004419 1/11 Cross Hyb Matching Probes None
SNAP00000004401 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004417 1/11 Cross Hyb Matching Probes None
SNAP00000037973 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037983 1/11 Cross Hyb Matching Probes None
SNAP00000041958 1/11 Cross Hyb Matching Probes None
Y54E10BL.2 1/11 Cross Hyb Matching Probes A 
T28F2.8 2/11 Cross Hyb Matching Probes A 
C15A11.1 1/11 Cross Hyb Matching Probes A 
C15A11.5 1/11 Cross Hyb Matching Probes A 
C50D2.4 1/11 Cross Hyb Matching Probes A 
F11G11.11.1 1/11 Cross Hyb Matching Probes A 
F11G11.12 1/11 Cross Hyb Matching Probes A 
M195.1 1/11 Cross Hyb Matching Probes A 
C09G5.4 1/11 Cross Hyb Matching Probes A 
C09G5.5 1/11 Cross Hyb Matching Probes A 
F38A3.1 1/11 Cross Hyb Matching Probes A 
F09G8.6 1/11 Cross Hyb Matching Probes A 
ZK1010.7 1/11 Cross Hyb Matching Probes A 
F14F7.1.2 1/11 Cross Hyb Matching Probes A 
F14F7.1.1 1/11 Cross Hyb Matching Probes A 
F14F7.1.3 1/11 Cross Hyb Matching Probes A 
Y38C1BA.3 1/11 Cross Hyb Matching Probes R A 
F30B5.1 2/11 Cross Hyb Matching Probes A 
Y73B6BL.34 1/11 Cross Hyb Matching Probes None
T28C6.4 1/11 Cross Hyb Matching Probes A 
T28C6.6 1/11 Cross Hyb Matching Probes A 
T05A1.2 2/11 Cross Hyb Matching Probes A 
C24F3.6 2/11 Cross Hyb Matching Probes None
C29F4.1.2 1/11 Cross Hyb Matching Probes None
C29F4.1.1 1/11 Cross Hyb Matching Probes None
F12F6.6 1/11 Cross Hyb Matching Probes None
M18.1 2/11 Cross Hyb Matching Probes A 
F52B11.4 2/11 Cross Hyb Matching Probes A 
F41F3.4 2/11 Cross Hyb Matching Probes A 
F26F12.1 1/11 Cross Hyb Matching Probes A 
T15B7.4 2/11 Cross Hyb Matching Probes A 
T15B7.3 2/11 Cross Hyb Matching Probes A 
B0222.6 1/11 Cross Hyb Matching Probes A 
B0222.7 1/11 Cross Hyb Matching Probes A 
B0222.8 1/11 Cross Hyb Matching Probes A 
T06E4.6 1/11 Cross Hyb Matching Probes A 
F15H10.2 1/11 Cross Hyb Matching Probes A 
F15H10.1.2 1/11 Cross Hyb Matching Probes A 
F15H10.1.1 1/11 Cross Hyb Matching Probes A 
F57B7.3 1/11 Cross Hyb Matching Probes A 
T11F9.9 7/11 Cross Hyb Matching Probes R A 
ZK863.2 1/11 Cross Hyb Matching Probes A 
C50B6.4 1/11 Cross Hyb Matching Probes A 
Y2H9A.3 1/11 Cross Hyb Matching Probes A 
C35B8.1 1/11 Cross Hyb Matching Probes A 
C34F6.2 1/11 Cross Hyb Matching Probes A 
C34F6.3 1/11 Cross Hyb Matching Probes A 
C44C10.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11387964-11388931(+) 100.0 100.0
chrV:11486641-11487586(+) 92.33 97.0
chrV:11391477-11392444(-) 94.56 98.89
Public Domain and Genome References
Gene Title collagen
collagen
Gene Symbol col-154
col-155
Ensembl F55C10.2
F55C10.3
Entrez Gene 186300 Entrez gene
186301 Entrez gene
SwissProt Q20805 EMBL-EBI
Q21184 EMBL-EBI
WormBase CE05952 Wormbase
CE11182 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6817 phosphate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
42302 structural constituent of cuticle inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast