[Home] | [Total List]

[172718_x_at]

Description ZC178.1_rc /REP_DB=WormBase Gene ID /WP=CE15062 /TR=O17083 /GB=AAB70339.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 38      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 632
1 2 3 4 range
A 79.2
(-1.2)
A 		65.9
(-1.6)
A 		4.3
(-3)
A 		259.3
(3)
P 		255
B 132.2
(3)
A 		99.7
(1.2)
A 		23.7
(-3)
A 		129.8
(2.9)
P 		109
C 81.6
(-2.3)
A 		8.6
(-3)
A 		5.9
(-3)
A 		636.7
(3)
P 		631
avr 97.7
(-1.4) 		58.1
(-2.2) 		11.3
(-3) 		341.9
(3) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 58.7
(3)
A 		10.5
(-2.6)
A 		6.6
(-3)
A 		14.5
(-2.1)
A 		26.5
(-0.7)
A 		12.1
(-2.4)
A 		52
B 21.7
(1.9)
A 		17.1
(0.6)
A 		3.8
(-3)
A 		25.7
(3)
A 		5.6
(-2.5)
A 		3.8
(-3)
A 		22
C 10.8
(-2)
A 		31.8
(1.2)
A 		6.3
(-2.7)
A 		24.8
(0.1)
A 		4.5
(-3)
A 		43.2
(3)
A 		39
avr 30.4
(3) 		19.8
(0.4) 		5.6
(-3) 		21.7
(0.9) 		12.2
(-1.4) 		19.7
(0.4) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 28.8
(1.5)
A 		14.3
(-0.9)
A 		1.1
(-3)
A 		38
(3)
P 		37
B 42.2
(3)
A 		24.6
(0.1)
A 		5.5
(-3)
A 		27.7
(0.6)
P 		37
C 27
(-1.6)
A 		2.5
(-3)
A 		2.1
(-3)
A 		107.4
(3)
P 		105
avr 32.7
(0.3) 		13.8
(-1.8) 		2.9
(-3) 		57.7
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 10.8
(3)
A 		3.7
(-1.5)
A 		1.4
(-3)
A 		3.7
(-1.5)
A 		8
(1.2)
A 		2.9
(-2)
A 		9
B 7.5
(3)
A 		5.7
(1.4)
A 		0.9
(-3)
A 		6.8
(2.4)
A 		2.3
(-1.7)
A 		1.4
(-2.5)
A 		7
C 4
(-1.8)
A 		9.7
(0.8)
A 		1.6
(-2.9)
A 		5
(-1.4)
A 		1.4
(-3)
A 		14.5
(3)
A 		13
avr 7.4
(3) 		6.4
(2) 		1.3
(-3) 		5.2
(0.8) 		3.9
(-0.4) 		6.3
(1.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172718_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28150
Sequence Type Exemplar sequence
Representative Public ID ZC178.1 NCBI
Target Description ZC178.1_rc /REP_DB=WormBase Gene ID /WP=CE15062 /TR=O17083 /GB=AAB70339.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) ZC178.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZC178.1 ZC178.1_rc /REP_DB=WormBase Gene ID /WP=CE15062 /TR=O17083 /GB=AAB70339.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072841 11/11 Negative Strand Matching Probes A 
SNAP00000009736 11/11 Negative Strand Matching Probes None
GENEFINDER00000009753 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8704020-8705649(-) 100.0 100.0
chrV:8702814-8704726(-) 90.67 90.67
chrV:8702394-8704350(-) 90.36 90.36
chrV:8702514-8704486(-) 90.61 90.61
chrV:8702154-8703984(-) 89.87 89.87
chrV:8702541-8704230(-) 88.58 88.58
chrV:8703354-8704990(-) 85.64 85.64
chrV:8701947-8703880(-) 85.08 85.08
chrV:8701947-8704186(-) 73.85 73.85
chrV:8703534-8705171(-) 65.01 65.01
chrV:8701957-8703024(-) 62.25 62.25
chrV:8701938-8702844(-) 52.92 52.92
Public Domain and Genome References
Ensembl ZC178.1
Sequence
Target Sequence 
>C. ELEGANS:172718_X_AT
aattgtgtcttcaaccgacctaacgagctcaactgaatccagctcttcaagcaccactcc
aattatgtcttcaaccgacataacgagctcaactgaatccagcttctcacgcaccactcc
aattgtgtcttcaaccgacataacgagctcaactgaatccagcttctcacgcaccactcc
aattgtgtcttcaaccgacataacgagctcaactgaattcagctcctcaagcgccactcc
aattgtgtcttcaaccgacataacgagctcaactgaattcagcttctcacgcaccactcc
aattgtgtcttcaaccgacataacgagctcaactgaatccagctcctcaagcaacactcc
aattgtgtcttcaaccgaaataacgagctcaactgaattcagctcttcaagcaccactcc
aattgtgtcgtcaaccgacataacgagctcaactgaatccagctcctcaagcaccactcc
aattgtgtcttcaaccgacataacgagctcaactgaattcagctcttcaagcaccactcc
aattgtgtcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTGTCTTCAACCGACCTAACG 464 177 1021 Antisense
CGACCTAACGAGCTCAACTGAATCC 63 249 1036 Antisense
AGCACCACTCCAATTATGTCTTCAA 524 77 1070 Antisense
AGCTCAACTGAATCCAGCTTCTCAC 693 79 1106 Antisense
CACCACTCCAATTGTGTCTTCAACC 227 203 1132 Antisense
GAGCTCAACTGAATCCAGCTTCTCA 156 389 1165 Antisense
ACCACTCCAATTGTGTCTTCAACCG 600 85 1193 Antisense
CAACTGAATTCAGCTCCTCAAGCGC 213 187 1230 Antisense
CACCACTCCAATTGTGTCGTCAACC 226 203 1432 Antisense
CAAGCACCACTCCAATTGTGTCTTC 550 185 1488 Antisense
CAAGCACCACTCCAATTGTGTCGTC 551 185 1548 Antisense
Sequence Source Affymetrix Proprietary Database