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[172715_x_at]

Description F42F12.7_rc /REP_DB=WormBase Gene ID /WP=CE03318 /TR=Q20342 /GB=CAA92171.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 95      6grp_total > 65      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 895
1 2 3 4 range
A 458.1
(-1.4)
P 		560.9
(-0.5)
P 		983.4
(3)
P 		264.5
(-3)
P 		719
B 483
(-0.7)
P 		865.1
(1.9)
P 		1036.6
(3)
P 		141.6
(-3)
P 		895
C 389.7
(-1.5)
P 		647.5
(1.5)
P 		773.2
(3)
P 		264.5
(-3)
P 		509
avr 443.6
(-1.1) 		691.2
(1) 		931.1
(3) 		223.5
(-3) 		708

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 934
1 2 3 4 5 6 range
A 250.6
(-3)
P 		496.1
(-1.4)
P 		868.3
(1)
P 		738.9
(0.2)
P 		603.4
(-0.7)
P 		1171
(3)
P 		920
B 315
(-3)
P 		457.5
(-2)
P 		725.2
(-0.2)
P 		624
(-0.9)
P 		489.5
(-1.8)
P 		1184.3
(3)
P 		869
C 281.4
(-3)
P 		527.7
(-1)
P 		760.3
(0.8)
P 		557.1
(-0.8)
P 		589.7
(-0.5)
P 		1029.5
(3)
P 		748
avr 282.3
(-3) 		493.8
(-1.5) 		784.6
(0.6) 		640
(-0.5) 		560.9
(-1) 		1128.3
(3) 		846
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 166.8
(0.5)
P 		121.8
(-0.7)
P 		257.1
(3)
P 		38.7
(-3)
P 		218
B 154
(0.5)
P 		213.7
(2.2)
P 		240.2
(3)
P 		30.2
(-3)
P 		210
C 129
(-0.7)
P 		186.1
(0.8)
P 		269.5
(3)
P 		44.6
(-3)
P 		225
avr 149.9
(0.1) 		173.9
(0.7) 		255.6
(3) 		37.8
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 46.2
(-3)
P 		176.4
(0.3)
P 		189.1
(0.6)
P 		187.4
(0.5)
P 		182.1
(0.4)
P 		285.1
(3)
P 		239
B 109.6
(-3)
P 		152.3
(-2.2)
P 		176.1
(-1.8)
P 		165.3
(-2)
P 		198.9
(-1.4)
P 		441.6
(3)
P 		332
C 104.3
(-3)
P 		161
(-1.6)
P 		193.5
(-0.8)
P 		112
(-2.8)
P 		190.8
(-0.8)
P 		344.6
(3)
P 		240
avr 86.7
(-3) 		163.2
(-1.3) 		186.2
(-0.8) 		154.9
(-1.5) 		190.6
(-0.7) 		357.1
(3) 		270
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172715_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28164
Sequence Type Exemplar sequence
Representative Public ID F42F12.7 NCBI
Target Description F42F12.7_rc /REP_DB=WormBase Gene ID /WP=CE03318 /TR=Q20342 /GB=CAA92171.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029177, NM_001029178, NM_001029176, NM_001029179, NM_077672, NM_182450, NM_001029486, NM_077673
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000001336 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12356006:12361042:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171744 2/11 Cross Hyb Matching Probes B 
NM_001029181 2/11 Cross Hyb Matching Probes None
NM_001029176 3/11 Cross Hyb Matching Probes None
NM_077672 3/11 Cross Hyb Matching Probes A B 
NM_077669 3/11 Cross Hyb Matching Probes B 
NM_182450 3/11 Cross Hyb Matching Probes B 
NM_001029486 3/11 Cross Hyb Matching Probes None
NM_182449 4/11 Cross Hyb Matching Probes B 
NM_077673 3/11 Cross Hyb Matching Probes B 
GENEFINDER00000001338 3/11 Cross Hyb Matching Probes None
SNAP00000001329 2/11 Cross Hyb Matching Probes None
SNAP00000001333 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026296 3/11 Cross Hyb Matching Probes None
C03G5.8 2/11 Cross Hyb Matching Probes None
C03G5.2 2/11 Cross Hyb Matching Probes None
F42F12.1 3/11 Cross Hyb Matching Probes None
F42F12.9 3/11 Cross Hyb Matching Probes B 
F42F12.10 3/11 Cross Hyb Matching Probes None
F42F12.6 3/11 Cross Hyb Matching Probes A B 
F42F12.7 4/11 Cross Hyb Matching Probes None
F42F12.8.2 3/11 Cross Hyb Matching Probes B 
F42F12.8.1 3/11 Cross Hyb Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12356178-12357650(+) 99.59 99.59
chrX:12358585-12360913(+) 95.73 95.73
chrX:12342925-12343777(+) 95.12 95.12
chrX:8534662-8537265(+) 90.65 90.65
chrX:12358714-12361042(-) 100.0 100.0
chrX:12343054-12343906(-) 96.75 96.75
chrX:12356307-12357779(-) 95.73 95.73
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60761 Hypothetical protein F42F12.10 [Caenorhabditis elegans] emb|CAD54144.1| Hypothetical protein F42F12.8 [Caenorhabditis elegans] ref|NP_510074.2| Nematode Specific Peptide family, group C family member (nspc-15) [Caenorhabditis elegans] ref|NP_001024657.1| Nematode Specific Peptide family, group C family member (nspc-12) [Caenorhabditis elegans] 3.0E-55
blast CAD54145 Hypothetical protein F42F12.9 [Caenorhabditis elegans] ref|NP_872250.1| Nematode Specific Peptide family, group C family member (nspc-10) [Caenorhabditis elegans] 4.0E-54
blast CAA92172 Hypothetical protein F42F12.6 [Caenorhabditis elegans] emb|CAA92171.2| Hypothetical protein F42F12.7 [Caenorhabditis elegans] ref|NP_510073.2| Nematode Specific Peptide family, group C family member (nspc-13) [Caenorhabditis elegans] ref|NP_872249.1| Nematode Specific Peptide family, group C family member (nspc-14) [Caenorhabditis elegans] 6.0E-53
Sequence
Target Sequence 
>C. ELEGANS:172715_X_AT
gtaaagcttgttgcaaccactcatcttgaattcttgtttcttggctggagtagttttcaa
gcagcatctgaagtctttatcagttgtgcaggaaccatcatagacagcagcacagttatg
aacacagagattgtagcaagtcttgtttctgtgagtggcaaaactgatccatggagagca
gaatgcgtaagattcaccaccattgacaccagcacagaactcttgacagagttgcaaggt
gatggagctgatggcagaaacaaggcaaagggcaacgagggtgcgaaggaatgaatatcc
ttgcagttccttcgcaccctcgttgccctctgccttgtttctgccatcagctccatcacc
ttgcaactctgtcaagagttctgtgctggtgtcaatggtggcgaatcttacgcattctgc
tctccatggatcagttttgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAAAGCTTGTTGCAACCACTCATC 234 461 25 Antisense
TCTTGAATTCTTGTTTCTTGGCTGG 322 619 48 Antisense
TGAAGTCTTTATCAGTTGTGCAGGA 377 575 93 Antisense
GCAAGTCTTGTTTCTGTGAGTGGCA 423 321 160 Antisense
GTAAGATTCACCACCATTGACACCA 88 463 211 Antisense
TTGACACCAGCACAGAACTCTTGAC 343 703 227 Antisense
TGAATATCCTTGCAGTTCCTTCGCA 124 577 316 Antisense
TCCATCACCTTGCAACTCTGTCAAG 390 591 376 Antisense
GTCAAGAGTTCTGTGCTGGTGTCAA 401 463 395 Antisense
TGGCGAATCTTACGCATTCTGCTCT 475 545 423 Antisense
GCTCTCCATGGATCAGTTTTGCCAC 28 301 443 Antisense
Sequence Source Affymetrix Proprietary Database