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[172712_x_at]

Description W02B3.6_rc /REP_DB=WormBase Gene ID /WP=CE02078 /TR=Q09640 /GB=AAA64325.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 10      4grp_total > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2854
1 2 3 4 range
A 314.6
(-2.3)
A 		17.5
(-3)
A 		58.6
(-2.9)
A 		2460.9
(3)
A 		2443
B 563.2
(0.5)
P 		81.2
(-3)
A 		75.1
(-3)
A 		912.5
(3)
A 		837
C 378.5
(-2.2)
A 		86.1
(-2.9)
A 		21
(-3)
A 		2871.9
(3)
P 		2851
avr 418.8
(-1.9) 		61.6
(-3) 		51.6
(-3) 		2081.8
(3) 		2030

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 932
1 2 3 4 5 6 range
A 126.1
(-2.4)
A 		52.1
(-3)
A 		779.7
(3)
P 		90.2
(-2.7)
A 		336.4
(-0.7)
M 		186.3
(-1.9)
A 		728
B 282.3
(0.6)
A 		361.9
(2.4)
A 		388.1
(3)
A 		125.1
(-3)
A 		176.8
(-1.8)
A 		289.9
(0.8)
A 		263
C 49.7
(-2.9)
A 		971.6
(3)
P 		57.8
(-2.9)
A 		279.5
(-1.5)
A 		39.5
(-3)
A 		289.6
(-1.4)
A 		932
avr 152.7
(-3) 		461.9
(3) 		408.5
(2) 		164.9
(-2.8) 		184.2
(-2.4) 		255.3
(-1) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 114.5
(-1.1)
A 		3.8
(-3)
A 		15.3
(-2.8)
A 		360.2
(3)
A 		356
B 179.6
(2.5)
P 		20.1
(-2.9)
A 		17.4
(-3)
A 		194.5
(3)
A 		177
C 125.3
(-1.5)
A 		24.8
(-2.8)
A 		7.3
(-3)
A 		484.3
(3)
P 		477
avr 139.8
(-0.7) 		16.2
(-2.9) 		13.3
(-3) 		346.3
(3) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 23.3
(-2.8)
A 		18.5
(-3)
A 		169.8
(3)
P 		22.9
(-2.8)
A 		101.5
(0.3)
M 		45.4
(-1.9)
A 		151
B 98.2
(1.5)
A 		120.5
(3)
A 		94.3
(1.2)
A 		33.1
(-3)
A 		71.8
(-0.3)
A 		108.1
(2.1)
A 		87
C 18.4
(-2.9)
A 		296.5
(3)
P 		14.7
(-3)
A 		56.2
(-2.1)
A 		12.8
(-3)
A 		96.9
(-1.2)
A 		284
avr 46.6
(-2.5) 		145.2
(3) 		92.9
(0.1) 		37.4
(-3) 		62
(-1.6) 		83.5
(-0.4) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172712_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28129
Sequence Type Exemplar sequence
Representative Public ID W02B3.6 NCBI
Target Description W02B3.6_rc /REP_DB=WormBase Gene ID /WP=CE02078 /TR=Q09640 /GB=AAA64325.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) W02B3.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W02B3.6 W02B3.6_rc /REP_DB=WormBase Gene ID /WP=CE02078 /TR=Q09640 /GB=AAA64325.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061393 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000003373 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021882 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024789 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 2/11 Cross Hyb Matching Probes None
T02H6.3 3/11 Cross Hyb Matching Probes A 
NM_064837 11/11 Negative Strand Matching Probes A 
SNAP00000011594 11/11 Negative Strand Matching Probes None
GENEFINDER00000011601 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl W02B3.6
Sequence
Target Sequence 
>C. ELEGANS:172712_X_AT
gagactctccgttgtgagaccaatcgtgatgagacccatcgtggcgagacctatcgtgtt
gagacccatcgtggcgagacccttcgtggtgagacctagcggggtgagaccctttgtggt
gagtcccatcgtgatgagacccatcgtgatgagacccttcgtgatgagacccttcgtgat
gagacccttcgtggtgagacctagcggggtgagacccttcgtggtgagtcccatcgtgat
gagacccatcgtgatgagacccatcgtggtgagacccatcgtgatgagacccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTCTCCGTTGTGAGACCAATC 335 393 73 Antisense
TGGCGAGACCTATCGTGTTGAGACC 481 545 114 Antisense
ACCCTTCGTGGTGAGACCTAGCGGG 304 75 151 Antisense
CCCTTTGTGGTGAGTCCCATCGTGA 464 259 182 Antisense
GAGACCCATCGTGATGAGACCCTTC 178 395 208 Antisense
GTGATGAGACCCTTCGTGATGAGAC 107 485 233 Antisense
ATGAGACCCTTCGTGGTGAGACCTA 596 43 251 Antisense
CTAGCGGGGTGAGACCCTTCGTGGT 321 197 273 Antisense
CTTCGTGGTGAGTCCCATCGTGATG 206 221 289 Antisense
ATGAGACCCATCGTGGTGAGACCCA 598 43 326 Antisense
GAGACCCATCGTGATGAGACCCATC 179 395 343 Antisense
Sequence Source Affymetrix Proprietary Database