[Home] | [Total List]

[172708_x_at]

Description T21D12.6_rc /REP_DB=WormBase Gene ID /WP=CE18270 /TR=O16780 /GB=AAC48088.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 44      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 33      6grp_total > 45      4grp_total > 04      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11093
1 2 3 4 range
A 1936.1
(-2.2)
P 		537.8
(-3)
P 		548.3
(-3)
P 		11314.2
(3)
P 		10776
B 2963.3
(0.1)
P 		772.8
(-2.9)
P 		673.4
(-3)
P 		5173.1
(3)
P 		4500
C 2241.2
(-1.9)
P 		411.3
(-2.9)
P 		292.1
(-3)
P 		11384.7
(3)
P 		11093
avr 2380.2
(-1.7) 		574
(-3) 		504.6
(-3) 		9290.7
(3) 		8786

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4353
1 2 3 4 5 6 range
A 1282
(-1.7)
P 		674
(-2.6)
P 		4545.6
(3)
P 		408.8
(-3)
P 		1842.5
(-0.9)
P 		1304.9
(-1.7)
P 		4137
B 1689.3
(2.7)
P 		1733.2
(3)
P 		1027.3
(-2)
P 		1007.6
(-2.2)
P 		888.4
(-3)
P 		1733.3
(3)
P 		845
C 363
(-2.8)
P 		4479.8
(3)
P 		422.6
(-2.7)
P 		1111.4
(-1.7)
P 		192.3
(-3)
P 		1639.6
(-1)
P 		4288
avr 1111.4
(-1.9) 		2295.7
(3) 		1998.5
(1.8) 		842.6
(-3) 		974.4
(-2.5) 		1559.3
(-0) 		1453
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1818
1 2 3 4 range
A 704.9
(-0.7)
P 		116.7
(-3)
P 		143.3
(-2.9)
P 		1656.2
(3)
P 		1540
B 945
(2)
P 		190.9
(-2.8)
P 		156
(-3)
P 		1102.4
(3)
P 		946
C 741.9
(-0.9)
P 		118.2
(-2.9)
P 		101.8
(-3)
P 		1919.6
(3)
P 		1818
avr 797.3
(-0.2) 		141.9
(-3) 		133.7
(-3) 		1559.4
(3) 		1426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1305
1 2 3 4 5 6 range
A 236.3
(-2.1)
P 		239.7
(-2.1)
P 		989.9
(3)
P 		103.7
(-3)
P 		556
(0.1)
P 		317.7
(-1.6)
P 		886
B 587.8
(2.1)
P 		576.9
(2)
P 		249.5
(-3)
P 		266.9
(-2.7)
P 		360.9
(-1.3)
P 		646.3
(3)
P 		397
C 134.5
(-2.7)
P 		1366.9
(3)
P 		107.6
(-2.8)
P 		223.5
(-2.3)
P 		62.2
(-3)
P 		548.9
(-0.8)
P 		1305
avr 319.5
(-1.6) 		727.8
(3) 		449
(-0.2) 		198
(-3) 		326.4
(-1.5) 		504.3
(0.5) 		530
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172708_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28143
Sequence Type Exemplar sequence
Representative Public ID T21D12.6 NCBI
Target Description T21D12.6_rc /REP_DB=WormBase Gene ID /WP=CE18270 /TR=O16780 /GB=AAC48088.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T21D12.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T21D12.6 T21D12.6_rc /REP_DB=WormBase Gene ID /WP=CE18270 /TR=O16780 /GB=AAC48088.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 6/11 Cross Hyb Matching Probes A 
NM_077120 1/11 Cross Hyb Matching Probes A 
NM_073039 2/11 Cross Hyb Matching Probes A 
NM_061393 4/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042962 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 3/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 4/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021686 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021882 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024789 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 6/11 Cross Hyb Matching Probes None
GENEFINDER00000006188 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012659 2/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 2/11 Cross Hyb Matching Probes None
GENEFINDER00000019681 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021403 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021407 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021411 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024954 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026636 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033792 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005827 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 3/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 4/11 Cross Hyb Matching Probes None
GENEFINDER00000008040 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043457 1/11 Cross Hyb Matching Probes None
T02H6.3 4/11 Cross Hyb Matching Probes A 
Y116A8C.41 6/11 Cross Hyb Matching Probes A 
Y54B9A.1 2/11 Cross Hyb Matching Probes A 
C24A3.1 1/11 Cross Hyb Matching Probes A 
SNAP00000019190 11/11 Negative Strand Matching Probes None
GENEFINDER00000019201 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172708_X_AT
gagacccttcgtggtgagagctttcgtggagagacccttcttggtgagacccatcgtggt
gagacccttcgtggtgagacccatcgtggtgagacccttcgtggtgagacccatcgtggt
gagacccttcgtggtgagacccatcgtggtgagacccttcgtggtgagacccttcgtggt
gagacccttcgtggtgagacccatcggggtgagacccatcgtggtgagacccatcgaggt
gagacccatcgtggtgagacctttcgtggtgagacccttcgtggtgagacccatcgttgt
gagacccttcgtggtgagacccatcgtggtgagacctttcgtggtgagacccatcgtggt
gagacctttcgtggagagacccatcgtggtgagacccttcgtggtgagacccatcgtggt
gagacccatcgtggtgagacctttcgtggtgagacctttcgtggtgagacccatcgtggt
gagacgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACCCTTCGTGGTGAGAGCTTTC 611 393 82 Antisense
TGGAGAGACCCTTCTTGGTGAGACC 627 549 108 Antisense
TGGTGAGACCCTTCGTGGTGAGACC 535 551 243 Antisense
CCCTTCGTGGTGAGACCCATCGGGG 461 259 266 Antisense
CCCATCGTGGTGAGACCCATCGAGG 160 259 296 Antisense
GTTGTGAGACCCTTCGTGGTGAGAC 701 435 377 Antisense
ACCCATCGTGGTGAGACCTTTCGTG 546 89 400 Antisense
CCTTTCGTGGTGAGACCCATCGTGG 462 259 416 Antisense
GAGACCTTTCGTGGAGAGACCCATC 612 393 442 Antisense
CCATCGTGGTGAGACCCATCGTGGT 126 271 492 Antisense
GTGAGACCCATCGTGGTGAGACGCA 461 483 545 Antisense
Sequence Source Affymetrix Proprietary Database