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[172707_x_at]

Description T24H7.5A /REP_DB=WormBase Gene ID /WP=CE21203 /TR=Q10463 /GB=AAD31556.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_high1_10_10 > 92      6grp_total > 83      4grp_total > 05      6grp_cgc > 86      6grp_high1_sub > 04_05      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 398
1 2 3 4 range
A 187.7
(1.4)
P 		57.4
(-3)
A 		74.5
(-2.4)
A 		236
(3)
P 		179
B 139.4
(0.8)
P 		80.8
(-3)
A 		84.3
(-2.8)
A 		173
(3)
P 		92
C 133.6
(-1.6)
P 		41.5
(-3)
A 		65.6
(-2.6)
A 		439
(3)
P 		398
avr 153.6
(-0.5) 		59.9
(-3) 		74.8
(-2.6) 		282.7
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 92.1
(-3)
P 		163.9
(2.1)
P 		161.7
(1.9)
A 		176.9
(3)
P 		146.7
(0.9)
P 		105.5
(-2.1)
P 		85
B 153.5
(0.5)
P 		154.4
(0.6)
P 		99.9
(-3)
P 		141.6
(-0.3)
P 		191.4
(3)
P 		151.9
(0.4)
P 		92
C 108.6
(-3)
P 		128.1
(-1.5)
P 		135.2
(-0.9)
M 		182.3
(2.8)
P 		136
(-0.9)
P 		185.2
(3)
P 		77
avr 118.1
(-3) 		148.8
(0.8) 		132.3
(-1.3) 		166.9
(3) 		158
(1.9) 		147.5
(0.6) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 68.3
(3)
P 		12.5
(-3)
A 		19.5
(-2.2)
A 		34.5
(-0.6)
P 		56
B 44.5
(3)
P 		20
(-2.9)
A 		19.5
(-3)
A 		36.9
(1.2)
P 		25
C 44.2
(0.1)
P 		11.9
(-3)
A 		22.9
(-1.9)
A 		74
(3)
P 		62
avr 52.3
(3) 		14.8
(-3) 		20.6
(-2.1) 		48.5
(2.4) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 17
(-3)
P 		58.3
(3)
P 		35.2
(-0.4)
A 		44.9
(1.1)
P 		44.3
(1)
P 		25.7
(-1.7)
P 		41
B 53.4
(0.3)
P 		51.4
(0)
P 		24.3
(-3)
P 		37.5
(-1.5)
P 		77.8
(3)
P 		56.7
(0.6)
P 		54
C 40.2
(-1.7)
P 		39.1
(-2)
P 		34.4
(-3)
M 		36.7
(-2.5)
P 		44
(-0.9)
P 		62
(3)
P 		28
avr 36.9
(-1.6) 		49.6
(1.6) 		31.3
(-3) 		39.7
(-0.9) 		55.4
(3) 		48.1
(1.2) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172707_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4781
Sequence Type Exemplar sequence
Representative Public ID T24H7.5A NCBI
Target Description T24H7.5A /REP_DB=WormBase Gene ID /WP=CE21203 /TR=Q10463 /GB=AAD31556.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062843(11), NM_062845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062843 NCBI Caenorhabditis elegans T24H7.5b (ATPase) mRNA, complete cds. 11/11 A 
NM_062845 NCBI Caenorhabditis elegans T24H7.5a (ATPase) mRNA, complete cds. 11/11 None
SNAP00000030997 ENSEMBL cdna:SNAP chromosome:CEL140:II:6236834:6244182:-1 11/11 None
GENEFINDER00000031004 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6236834:6244182:-1 11/11 None
T24H7.5b ENSEMBL cdna:known chromosome:CEL140:II:6234441:6244182:-1 gene:T24H7.5 11/11 A 
T24H7.5a ENSEMBL cdna:known chromosome:CEL140:II:6236793:6244182:-1 gene:T24H7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174031 3 2 NM_062843 172707_x_at (11), 175017_s_at (11), 188289_s_at (11)
NM_062844 175017_s_at (11), 188289_s_at (11)
NM_062845 172707_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6236830-6244179(-) 100.0 100.0
Public Domain and Genome References
Ensembl T24H7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD31557 Hypothetical protein T24H7.5b [Caenorhabditis elegans] ref|NP_495244.1| T24H7.5b [Caenorhabditis elegans] 0.0
blast AAD31556 Hypothetical protein T24H7.5a [Caenorhabditis elegans] ref|NP_495246.1| T24H7.5a [Caenorhabditis elegans] pir||D88175 protein T24H7.5a [imported] - Caenorhabditis elegans 0.0
blast CAE59269 Hypothetical protein CBG02601 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A10B_HUMAN (O94823) Potential phospholipid-transporting ATPase VB (EC 3.6.3.1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.2E-9
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.2E-9
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.2E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495244.1 11 91-108,112-129,317-339,364-386,993-1015,1025-1047,1077-1099,1109-1131,1138-1160,1180-1194,1215-1234
NP_495246.1 10 91-108,112-129,317-339,364-386,993-1015,1025-1047,1077-1099,1109-1131,1138-1160,1180-1202
T24H7.5b 11 91-108,112-129,317-339,364-386,993-1015,1025-1047,1077-1099,1109-1131,1138-1160,1180-1194,1215-1234
T24H7.5a 10 91-108,112-129,317-339,364-386,993-1015,1025-1047,1077-1099,1109-1131,1138-1160,1180-1202
SNAP00000030997 8 91-108,112-129,317-339,921-943,956-975,1033-1055,1067-1089,1109-1131
GENEFINDER00000031004 8 91-108,112-129,317-339,933-955,968-987,1045-1067,1079-1101,1121-1143
Sequence
Target Sequence 
>C. ELEGANS:172707_X_AT
gttcagcctgtagttgttggagtcttagatcaagattatgatgatcaaacattaatgaat
aagccagaactttatgtgattggaagggaaaaccaactgtacacgtggaaacatttcttt
cgagatgtcattgatggtatctaccaagctgcagttatttattatgttgcatatctgact
ctggacaactctacgtcaagcctttgggaaatgggattttacattgcaactagctcaatt
cttgtcaattctggtcatctagctctacaagttcgctattggcattggcaacttgttgca
ctattctcatttttcatactttttaattttgcatttttctttgccgaatgtcttactgcg
gcagctgcaatggttcctgatccaccagtttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAGCCTGTAGTTGTTGGAGTCT 378 445 3127 Antisense
GGTATCTACCAAGCTGCAGTTATTT 67 505 3262 Antisense
GCATATCTGACTCTGGACAACTCTA 622 307 3295 Antisense
ACAACTCTACGTCAAGCCTTTGGGA 645 111 3311 Antisense
TTGCAACTAGCTCAATTCTTGTCAA 282 703 3350 Antisense
GTCAATTCTGGTCATCTAGCTCTAC 629 463 3370 Antisense
GTTCGCTATTGGCATTGGCAACTTG 536 441 3397 Antisense
GCAACTTGTTGCACTATTCTCATTT 390 319 3414 Antisense
TTTCTTTGCCGAATGTCTTACTGCG 94 671 3462 Antisense
TACTGCGGCAGCTGCAATGGTTCCT 258 647 3480 Antisense
CAATGGTTCCTGATCCACCAGTTTG 295 181 3494 Antisense
Sequence Source Affymetrix Proprietary Database