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[172706_x_at] cuticlin

Description F53F1.4 /REP_DB=WormBase Gene ID /WP=CE10938 /TR=Q9XVM6 /GB=CAB03125.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cuticlin
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 23      6grp_total > 11      4grp_total > 57      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9257
1 2 3 4 range
A 1157.7
(-2.4)
P 		7323.7
(1.7)
P 		9390.7
(3)
P 		157.5
(-3)
P 		9233
B 1155.3
(-2.3)
P 		8026.5
(2.2)
P 		9293.9
(3)
P 		133.7
(-3)
P 		9160
C 1127.2
(-2.3)
P 		7567.7
(2.7)
P 		8001
(3)
P 		151.6
(-3)
P 		7849
avr 1146.7
(-2.3) 		7639.3
(2.1) 		8895.2
(3) 		147.6
(-3) 		8748

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2794
1 2 3 4 5 6 range
A 1655
(-2.1)
P 		3794.9
(3)
P 		3188.3
(1.6)
P 		1870.9
(-1.6)
P 		1315.3
(-2.9)
P 		1284.6
(-3)
P 		2510
B 1758.4
(-2)
P 		3700.4
(3)
P 		2671.4
(0.4)
P 		1647
(-2.3)
P 		1366.6
(-3)
P 		1389
(-2.9)
P 		2334
C 1897.2
(-0.9)
P 		3593.3
(3)
P 		2780.8
(1.1)
P 		1010
(-3)
P 		1869.7
(-1)
P 		1001
(-3)
P 		2592
avr 1770.2
(-1.7) 		3696.2
(3) 		2880.2
(1) 		1509.3
(-2.3) 		1517.2
(-2.3) 		1224.9
(-3) 		2471
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2766
1 2 3 4 range
A 421.5
(-2)
P 		1589.8
(0.9)
P 		2454.9
(3)
P 		23
(-3)
P 		2432
B 368.4
(-2)
P 		1982.4
(2.5)
P 		2153.6
(3)
P 		28.5
(-3)
P 		2125
C 373.1
(-2.2)
P 		2175.8
(1.7)
P 		2788.6
(3)
P 		25.6
(-3)
P 		2763
avr 387.7
(-2.1) 		1916
(1.6) 		2465.7
(3) 		25.7
(-3) 		2440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1147
1 2 3 4 5 6 range
A 305.1
(-3)
P 		1349.7
(3)
P 		694.4
(-0.8)
P 		474.5
(-2)
P 		396.9
(-2.5)
P 		312.8
(-3)
P 		1045
B 611.8
(-1.7)
P 		1231.7
(3)
P 		648.7
(-1.4)
P 		436.2
(-3)
P 		555.2
(-2.1)
P 		518
(-2.4)
P 		796
C 703.2
(0.4)
P 		1096.4
(3)
P 		707.8
(0.4)
P 		203.1
(-3)
P 		605
(-0.3)
P 		335.1
(-2.1)
P 		893
avr 540
(-1.8) 		1225.9
(3) 		683.6
(-0.8) 		371.3
(-3) 		519
(-2) 		388.6
(-2.9) 		855
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172706_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14754
Sequence Type Exemplar sequence
Representative Public ID F53F1.4 NCBI
Target Description F53F1.4 /REP_DB=WormBase Gene ID /WP=CE10938 /TR=Q9XVM6 /GB=CAB03125.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cuticlin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073923 NCBI Caenorhabditis elegans F53F1.4 (cuticlin) mRNA, complete cds. 11/11 None
SNAP00000038180 ENSEMBL cdna:SNAP chromosome:CEL140:V:13413702:13414129:1 11/11 None
GENEFINDER00000038190 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13413702:13414129:1 11/11 None
F53F1.4 ENSEMBL cdna:known chromosome:CEL140:V:13413669:13414310:1 gene:F53F1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073924 2/11 Cross Hyb Matching Probes A 
SNAP00000038181 2/11 Cross Hyb Matching Probes None
GENEFINDER00000038193 2/11 Cross Hyb Matching Probes None
F53F1.5 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13413701-13414129(+) 93.4 100.0
Public Domain and Genome References
Gene Title cuticlin
Ensembl F53F1.4
Entrez Gene 179822 Entrez gene
SwissProt Q9XVM6 EMBL-EBI
WormBase CE10938 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172706_X_AT
gcaaaagattgtcattttcttcgctgctatcgctgtttcccaagctttccttctcccatc
cggaggaggaggaggatgtggatgcgctccaccaccaccaccaccaccatgcggatgcgg
aggaccatctcttccaccactccaacttccacgctttgagctcccaagactctctcttcc
atccttcggaggaggtggttgcggaggaccagctccatgcggaggagccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAAGATTGTCATTTTCTTCGCT 270 319 15 Antisense
AAGATTGTCATTTTCTTCGCTGCTA 638 155 19 Antisense
TCCTTCTCCCATCCGGAGGAGGAGG 8 593 62 Antisense
GAGGAGGAGGAGGATGTGGATGCGC 23 405 77 Antisense
AGGAGGATGTGGATGCGCTCCACCA 304 57 84 Antisense
CACCATGCGGATGCGGAGGACCATC 608 199 119 Antisense
CATGCGGATGCGGAGGACCATCTCT 249 211 122 Antisense
TCTCTTCCATCCTTCGGAGGAGGTG 263 613 187 Antisense
AGGAGGTGGTTGCGGAGGACCAGCT 630 53 204 Antisense
GAGGACCAGCTCCATGCGGAGGAGC 9 405 218 Antisense
ACCAGCTCCATGCGGAGGAGCCGCC 156 87 222 Antisense
Sequence Source Affymetrix Proprietary Database