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[172704_x_at]

Description T28H11.6 /REP_DB=WormBase Gene ID /WP=CE09149 /GEN=ssp-11 /TR=Q23058 /GB=AAB04599.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 01      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 12.5
(-3)
A 		18.4
(-2.1)
A 		12.8
(-3)
A 		50.2
(3)
A 		38
B 48.8
(3)
A 		16
(-2.2)
A 		46.3
(2.6)
A 		10.6
(-3)
A 		38
C 12.9
(-3)
A 		12
(-3)
A 		13.4
(-2.9)
A 		128.3
(3)
A 		116
avr 24.7
(-1.8) 		15.5
(-3) 		24.2
(-1.9) 		63
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4084
1 2 3 4 5 6 range
A 15
(-3)
A 		12.3
(-3)
A 		46.2
(-3)
A 		202.2
(-2.7)
A 		2870.6
(1.2)
P 		4091.1
(3)
P 		4079
B 7.3
(-3)
A 		8.7
(-3)
A 		8
(-3)
A 		225.7
(-2.6)
M 		2471.3
(1)
P 		3721.4
(3)
P 		3714
C 7.3
(-3)
A 		16.1
(-3)
A 		9.2
(-3)
A 		198.6
(-2.7)
P 		1781.1
(-0.1)
P 		3728.8
(3)
P 		3722
avr 9.9
(-3) 		12.4
(-3) 		21.1
(-3) 		208.8
(-2.7) 		2374.3
(0.7) 		3847.1
(3) 		3837
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 4.6
(-1.1)
A 		4
(-2)
A 		3.3
(-3)
A 		7.3
(3)
A 		4
B 15.6
(3)
A 		3.9
(-2.3)
A 		10.7
(0.8)
A 		2.3
(-3)
A 		13
C 4.3
(-2.7)
A 		3.4
(-3)
A 		4.7
(-2.6)
A 		21.6
(3)
A 		18
avr 8.2
(1) 		3.8
(-3) 		6.2
(-0.8) 		10.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1386
1 2 3 4 5 6 range
A 2.8
(-3)
A 		4.4
(-3)
A 		10.1
(-3)
A 		51.3
(-2.7)
A 		866.2
(2.2)
P 		996
(3)
P 		993
B 2.5
(-3)
A 		2.9
(-3)
A 		1.9
(-3)
A 		59.8
(-2.7)
M 		1004
(1.3)
P 		1387.7
(3)
P 		1386
C 2.7
(-3)
A 		4.9
(-3)
A 		2.3
(-3)
A 		39.9
(-2.8)
P 		576.3
(-0.2)
P 		1248.3
(3)
P 		1246
avr 2.7
(-3) 		4.1
(-3) 		4.8
(-3) 		50.3
(-2.8) 		815.5
(1) 		1210.7
(3) 		1208
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172704_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11027
Sequence Type Exemplar sequence
Representative Public ID T28H11.6 NCBI
Target Description T28H11.6 /REP_DB=WormBase Gene ID /WP=CE09149 /GEN=ssp-11 /TR=Q23058 /GB=AAB04599.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068296(11), NM_068298(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068296 NCBI Caenorhabditis elegans Sperm-Specific family, class P family member (ssp-9) (ssp-9) mRNA, complete cds. 11/11 None
NM_068298 NCBI Caenorhabditis elegans Sperm-Specific family, class P family member (ssp-11) (ssp-11) mRNA, complete cds. 11/11 None
SNAP00000000747 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4999475:4999804:-1 11/11 None
GENEFINDER00000000760 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4999475:4999804:-1 11/11 None
SNAP00000020615 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4994361:4994690:-1 11/11 None
GENEFINDER00000020624 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4994361:4994720:-1 11/11 None
E03H12.10.1 ENSEMBL cdna:known chromosome:CEL140:IV:4993854:4994690:-1 gene:E03H12.10 11/11 None
T28H11.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:4999234:4999804:-1 gene:T28H11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069366 1/11 Cross Hyb Matching Probes A 
NM_058599 2/11 Cross Hyb Matching Probes A 
NM_060784 1/11 Cross Hyb Matching Probes A 
SNAP00000032493 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032499 2/11 Cross Hyb Matching Probes None
SNAP00000003940 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003950 1/11 Cross Hyb Matching Probes None
SNAP00000004252 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004269 1/11 Cross Hyb Matching Probes None
C55C2.2 2/11 Cross Hyb Matching Probes A 
W02D9.5 1/11 Cross Hyb Matching Probes A 
K07F5.9 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2562668-2562998(+) 91.52 91.52
chrIV:4999480-4999810(-) 100.0 100.0
chrIV:4994366-4994696(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol ssp-9
ssp-11
Ensembl E03H12.10
T28H11.6
Entrez Gene 177264 Entrez gene
177266 Entrez gene
SwissProt Q23058 EMBL-EBI
WormBase CE09149 Wormbase
CE09149 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04599 Sperm-specific family, class p protein 11 [Caenorhabditis elegans] ref|NP_500699.1| Sperm-Specific family, class P family member (ssp-11) [Caenorhabditis elegans] ref|NP_500697.1| Sperm-Specific family, class P family member (ssp-9) [Caenorhabditis elegans] gb|AAC47985.1| Sperm-specific family, class p protein 9 [Caenorhabditis elegans] 2.0E-42
blast CAA94274 Hypothetical protein K07F5.9 [Caenorhabditis elegans] ref|NP_501767.1| Sperm-Specific family, class P family member (ssp-10) [Caenorhabditis elegans] 3.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.7E-34
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.7E-34
Sequence
Target Sequence 
>C. ELEGANS:172704_X_AT
tccacccacaagctcgtcaatggtggagctgagaagatcatcttcaagatcaaatcatcc
aacaacaacgaataccgcattgccccggtgttcggatttgtcgatccagctggatcaaag
gatgttgtgatcactcgtactgctggtgcaccaaaagaggataaacttgtcatccatttt
gcaccagcaccagctgatgctactgatgctcaagccgctttcgctgcagtgactcctgct
ggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACCCACAAGCTCGTCAATGGTG 470 587 67 Antisense
GATCAAATCATCCAACAACAACGAA 530 421 114 Antisense
ACAACAACGAATACCGCATTGCCCC 160 113 128 Antisense
CATTGCCCCGGTGTTCGGATTTGTC 467 217 144 Antisense
TCGGATTTGTCGATCCAGCTGGATC 548 603 158 Antisense
GGATGTTGTGATCACTCGTACTGCT 128 513 186 Antisense
ACTCGTACTGCTGGTGCACCAAAAG 233 99 199 Antisense
TAAACTTGTCATCCATTTTGCACCA 267 641 228 Antisense
TGCACCAGCACCAGCTGATGCTACT 351 577 246 Antisense
TGATGCTACTGATGCTCAAGCCGCT 175 567 261 Antisense
TTCGCTGCAGTGACTCCTGCTGGAA 189 695 286 Antisense
Sequence Source Affymetrix Proprietary Database