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[172697_x_at]

Description K10B3.7 /REP_DB=WormBase Gene ID /WP=CE07370 /GEN=gpd-3 /TR=SW:P17330 /GB=AAB53869.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 09      6grp_total > 51      4grp_total > 52      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8558
1 2 3 4 range
A 24869.8
(-0)
P 		28592.9
(3)
P 		25605.8
(0.6)
P 		21177.7
(-3)
P 		7415
B 27033.7
(3)
P 		24417.9
(0.6)
P 		24986.4
(1.2)
P 		20388.9
(-3)
P 		6645
C 21121.8
(-0.7)
P 		22814
(3)
P 		20872.4
(-1.2)
P 		20035.3
(-3)
P 		2779
avr 24341.8
(1.8) 		25274.9
(3) 		23821.5
(1.2) 		20534
(-3) 		4741

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11525
1 2 3 4 5 6 range
A 29165.7
(2.1)
P 		23252.3
(-1.7)
P 		30496.6
(3)
P 		25983.2
(0.1)
P 		21163.5
(-3)
P 		22321.5
(-2.3)
P 		9333
B 21839.2
(-1.4)
P 		24173
(-0.1)
P 		29763.2
(3)
P 		25553.6
(0.7)
P 		18971.3
(-3)
P 		19784.5
(-2.5)
P 		10792
C 19692.1
(-2.8)
P 		25127.2
(1.1)
P 		26015.8
(1.7)
P 		27865.2
(3)
P 		19912.7
(-2.6)
P 		19389.4
(-3)
P 		8476
avr 23565.7
(-0.6) 		24184.2
(-0.1) 		28758.5
(3) 		26467.3
(1.4) 		20015.8
(-3) 		20498.5
(-2.7) 		8743
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5955
1 2 3 4 range
A 9055.1
(3)
P 		6206.8
(0.1)
P 		6693.8
(0.6)
P 		3100
(-3)
P 		5955
B 8620.8
(3)
P 		6030.7
(-0.6)
P 		5789.9
(-1)
P 		4344.9
(-3)
P 		4276
C 6991.9
(2.6)
P 		6559.2
(1.9)
P 		7274.7
(3)
P 		3378.3
(-3)
P 		3896
avr 8222.6
(3) 		6265.6
(0.5) 		6586.1
(0.9) 		3607.7
(-3) 		4615

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2893
1 2 3 4 5 6 range
A 5376.5
(-3)
P 		8269.7
(3)
P 		6641.5
(-0.4)
P 		6589.9
(-0.5)
P 		6386.2
(-0.9)
P 		5434.6
(-2.9)
P 		2893
B 7599
(0.9)
P 		8046.2
(3)
P 		7227.4
(-0.8)
P 		6768.3
(-3)
P 		7707.8
(1.4)
P 		7377.5
(-0.1)
P 		1278
C 7299
(1.9)
P 		7667.1
(3)
P 		6621.5
(-0)
P 		5603.7
(-3)
P 		6443.5
(-0.6)
P 		6490.7
(-0.4)
P 		2063
avr 6758.2
(-1.4) 		7994.3
(3) 		6830.1
(-1.2) 		6320.6
(-3) 		6845.8
(-1.1) 		6434.3
(-2.6) 		1674
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172697_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18458
Sequence Type Exemplar sequence
Representative Public ID K10B3.7 NCBI
Target Description K10B3.7 /REP_DB=WormBase Gene ID /WP=CE07370 /GEN=gpd-3 /TR=SW:P17330 /GB=AAB53869.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076133 NCBI Caenorhabditis elegans GPD (glyceraldehyde 3-phosphate dehydrogenase) family member (gpd-3) (gpd-3) mRNA, complete cds. 11/11 A 
SNAP00000032571 ENSEMBL cdna:SNAP chromosome:CEL140:X:3112191:3113312:-1 11/11 None
GENEFINDER00000032580 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3112191:3113312:-1 11/11 None
K10B3.7.1 ENSEMBL cdna:known chromosome:CEL140:X:3112082:3113332:-1 gene:K10B3.7 11/11 None
K10B3.7.2 ENSEMBL cdna:known chromosome:CEL140:X:3112092:3113334:-1 gene:K10B3.7 11/11 None
K10B3.7.3 ENSEMBL cdna:known chromosome:CEL140:X:3112097:3113373:-1 gene:K10B3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076135 8/11 Cross Hyb Matching Probes None
NM_076134 8/11 Cross Hyb Matching Probes A 
SNAP00000032572 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032583 8/11 Cross Hyb Matching Probes None
K10B3.8.3 8/11 Cross Hyb Matching Probes None
K10B3.8.2 8/11 Cross Hyb Matching Probes None
K10B3.8.1 8/11 Cross Hyb Matching Probes None
K10B3.9.1 8/11 Cross Hyb Matching Probes A 
K10B3.9.3 8/11 Cross Hyb Matching Probes None
K10B3.9.2 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3112190-3113312(-) 100.0 100.0
chrX:3113557-3114672(-) 96.98 96.98
Public Domain and Genome References
Gene Title
Gene Symbol gpd-3
Ensembl K10B3.7
Entrez Gene 180601 Entrez gene
SwissProt P17330 EMBL-EBI
WormBase CE07370 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258588_S_AT glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GAPC) / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase at
CANINE_2:CFA.16332.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.12458.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.12458.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.13010.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.15326.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.15326.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.22564.1.S1_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.23015.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.26731.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.30894.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.5711.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.8103.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
DROSOPHILA_2:1632667_S_AT Glyceraldehyde 3 phosphate dehydrogenase 2 dm
DROSOPHILA_2:1627915_A_AT Glyceraldehyde 3 phosphate dehydrogenase 2 dm
DROSGENOME1:143175_AT Glyceraldehyde 3 phosphate dehydrogenase 2 dm
MOUSE430A_2:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOE430A:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOUSE430_2:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MU11KSUBB:MSA.677.0_F_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74CV2:137249_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74AV2:162176_R_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74CV2:169710_I_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
RT-U34:M17701_S_AT glyceraldehyde-3-phosphate dehydrogenase rn
RG-U34A:M17701_S_AT glyceraldehyde-3-phosphate dehydrogenase rn
RAE230A:1367557_S_AT glyceraldehyde-3-phosphate dehydrogenase rn
RAT230_2:1367557_S_AT glyceraldehyde-3-phosphate dehydrogenase rn
RT-U34:M17701_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RG-U34A:M17701_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RAE230A:1367557_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RAT230_2:1367557_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6006 glucose metabolism inferred from electronic annotation QuickGO AmiGO
6096 glycolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4365 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity inferred from electronic annotation QuickGO AmiGO
8943 glyceraldehyde-3-phosphate dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53869 Gpd (glyceraldehyde 3-phosphate dehydrogenase) protein 3 [Caenorhabditis elegans] emb|CAA33327.1| gpd-3 gene product [Caenorhabditis elegans] ref|NP_508534.3| GPD (glyceraldehyde 3-phosphate dehydrogenase) family member (gpd-3) [Caenorhabditis elegans] sp|P17330|G3P3_CAEEL Glyceraldehyde-3-phosphate dehydrogenase 3 (GAPDH-3) 0.0
blast AAB53874 Gpd (glyceraldehyde 3-phosphate dehydrogenase) protein 2 [Caenorhabditis elegans] ref|NP_508535.1| GPD (glyceraldehyde 3-phosphate dehydrogenase) family member (gpd-2) [Caenorhabditis elegans] 0.0
blast CAA33326 gpd-2 gene product [Caenorhabditis elegans] sp|P17329|G3P2_CAEEL Glyceraldehyde-3-phosphate dehydrogenase 2 (GAPDH-2) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000173 EMBL-EBI Glyceraldehyde 3-phosphate dehydrogenase 1.3E-119
Pfam IPR000173 EMBL-EBI Glyceraldehyde 3-phosphate dehydrogenase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:172697_X_AT
caatgttcgtcgtcggagtcaaccacgagaagtacgatcatgccaacgaccacatcatct
ccaatgcttcctgcaccactaactgccttgctccacttgccaaggtcatcaatgacaact
tcggaattattgagggacttatgaccactgtccacgccgtcaccgccacccaaaagactg
ttgacggaccatcaggaaagctctggagagacggacgtggagctggacaaaacatcatcc
cagcctctactggagccgctaaggctgtcggcaaggttatcccagagctcaatggaaagc
tcaccggaatggctttccgtgtcccaaccccagatgtctctgttgttgatctcactgctc
gtcttgagaagccagcttccctcgatgacattaagaaggttatcaaggctgccgctgacg
gaccaatgaagggaattctcgcttacaccgaggatcaagttgtctccactgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGTTCGTCGTCGGAGTCAACCA 405 183 413 Antisense
GAAGTACGATCATGCCAACGACCAC 472 335 441 Antisense
TTGCTCCACTTGCCAAGGTCATCAA 171 703 500 Antisense
AGGGACTTATGACCACTGTCCACGC 486 55 545 Antisense
CAGCCTCTACTGGAGCCGCTAAGGC 483 203 653 Antisense
TGTCGGCAAGGTTATCCCAGAGCTC 438 557 678 Antisense
TCACCGGAATGGCTTTCCGTGTCCC 627 587 713 Antisense
CCCAACCCCAGATGTCTCTGTTGTT 127 259 735 Antisense
CACTGCTCGTCTTGAGAAGCCAGCT 213 199 765 Antisense
GTTATCAAGGCTGCCGCTGACGGAC 346 447 811 Antisense
CGAGGATCAAGTTGTCTCCACTGAC 99 251 861 Antisense
Sequence Source Affymetrix Proprietary Database