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[172694_x_at] Globin

Description T22C1.2 /REP_DB=WormBase Gene ID /WP=CE06490 /TR=Q22663 /GB=CAA99921.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Globin
Cluster 6grp_high1_10_10 > 03      4grp_highest_8_8 > 56      4grp_high_8_8 > 34      6grp_total > 15      4grp_total > 45      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 181.4
(3)
P 		172.6
(2.4)
P 		91.2
(-3)
P 		92.2
(-2.9)
P 		90
B 141.9
(3)
P 		116.6
(0.2)
P 		96
(-2.1)
P 		88
(-3)
P 		54
C 150.7
(3)
P 		113
(-0.3)
P 		82.1
(-3)
P 		122
(0.5)
P 		69
avr 158
(3) 		134.1
(0.9) 		89.8
(-3) 		100.7
(-2) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 144.8
(2.8)
P 		147.9
(3)
P 		98.4
(-0.8)
P 		77.7
(-2.3)
P 		101.5
(-0.5)
P 		68.9
(-3)
P 		79
B 176.1
(3)
P 		119.8
(-0.9)
P 		159.7
(1.9)
P 		139.7
(0.4)
P 		90.5
(-3)
P 		104
(-2.1)
P 		86
C 108.8
(2.1)
P 		116.6
(3)
P 		93.1
(0.3)
P 		64.6
(-3)
A 		100.3
(1.1)
P 		99.4
(1)
P 		52
avr 143.2
(3) 		128.1
(1.3) 		117.1
(0) 		94
(-2.6) 		97.4
(-2.2) 		90.8
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 66.1
(3)
P 		37.5
(-0.3)
P 		23.8
(-1.8)
P 		13.5
(-3)
P 		53
B 45.3
(3)
P 		28.8
(-0.7)
P 		22.2
(-2.2)
P 		18.8
(-3)
P 		27
C 49.9
(3)
P 		32.5
(-0.6)
P 		28.6
(-1.4)
P 		20.6
(-3)
P 		29
avr 53.8
(3) 		32.9
(-0.5) 		24.9
(-1.8) 		17.6
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 26.7
(-1.3)
P 		52.6
(3)
P 		21.4
(-2.2)
P 		19.7
(-2.5)
P 		30.6
(-0.7)
P 		16.8
(-3)
P 		36
B 61.3
(3)
P 		39.9
(-2.2)
P 		38.8
(-2.5)
P 		37
(-3)
P 		36.8
(-3)
P 		38.8
(-2.5)
P 		25
C 40.3
(3)
P 		35.6
(2)
P 		23.7
(-0.6)
P 		13
(-3)
A 		32.5
(1.3)
P 		33.3
(1.5)
P 		27
avr 42.8
(3) 		42.7
(3) 		28
(-1.5) 		23.2
(-3) 		33.3
(0.1) 		29.6
(-1) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172694_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2518
Sequence Type Exemplar sequence
Representative Public ID T22C1.2 NCBI
Target Description T22C1.2 /REP_DB=WormBase Gene ID /WP=CE06490 /TR=Q22663 /GB=CAA99921.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Globin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059787 NCBI Caenorhabditis elegans T22C1.2 (Globin) mRNA, complete cds. 11/11 None
SNAP00000000046 ENSEMBL cdna:SNAP chromosome:CEL140:I:7945798:7946608:-1 11/11 None
T22C1.2 ENSEMBL cdna:known chromosome:CEL140:I:7945798:7946612:-1 gene:T22C1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000070 8/11 Cross Hyb Matching Probes None
NM_059786 9/11 Negative Strand Matching Probes None
T22C1.1 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7945728-7946539(-) 100.0 100.0
Public Domain and Genome References
Gene Title Globin
Ensembl T22C1.2
Entrez Gene 172564 Entrez gene
SwissProt Q22663 EMBL-EBI
WormBase CE06490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99921 Hypothetical protein T22C1.2 [Caenorhabditis elegans] ref|NP_492188.1| T22C1.2 [Caenorhabditis elegans] 5.0E-94
blast CAE63727 Hypothetical protein CBG08252 [Caenorhabditis briggsae] 3.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR000971 EMBL-EBI Globin 6.2E-5
Sequence
Target Sequence 
>C. ELEGANS:172694_X_AT
ctgctcctcctccgaagaagaataagccggaaggcagaaaagctgacaaccaaatattga
attcatatcagaaatcaatagttcgtaacgcatggagacatatgagtcaaaaaggaccgt
caaactgtggaagtacaataacgagaagaatgatggccagaaaaagtacaatcggggata
ttcttgatagatcaacactggattaccataatttgcagattgtcgaatttctacaaaaag
tgatgcaaagtctggacgagcctgacaaaatatcgaaactttgtcaagaaatcggccaga
aacatgcaaagtatcggcgaagtaaaggaatgaagattgattactgggacaaattgggcg
aggcgatcacggaaacaattcgagaatatcaaggctggaaaattcacagagaaagtcttc
gagccgccactgttctcgtctcatatgttgtggatcaactacggttcggttactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCTCCTCCTCCGAAGAAGAATAA 496 237 35 Antisense
GGAAGGCAGAAAAGCTGACAACCAA 25 533 63 Antisense
TAGTTCGTAACGCATGGAGACATAT 150 627 113 Antisense
AGGACCGTCAAACTGTGGAAGTACA 637 55 147 Antisense
GATGCAAAGTCTGGACGAGCCTGAC 617 411 276 Antisense
GGGACAAATTGGGCGAGGCGATCAC 394 493 380 Antisense
GGCGAGGCGATCACGGAAACAATTC 26 541 391 Antisense
ACAATTCGAGAATATCAAGGCTGGA 186 115 409 Antisense
CACAGAGAAAGTCTTCGAGCCGCCA 446 193 439 Antisense
GTTCTCGTCTCATATGTTGTGGATC 649 441 466 Antisense
GGATCAACTACGGTTCGGTTACTCA 493 511 486 Antisense
Sequence Source Affymetrix Proprietary Database