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[172693_at] serine/threonine protein phosphatase

Description F22D6.7_rc /REP_DB=WormBase Gene ID /WP=CE05688 /TR=Q19728 /GB=CAA95815.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 46      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 57.2
(-2.1)
A 		36.8
(-2.7)
A 		26.7
(-3)
A 		241.7
(3)
P 		215
B 51.6
(-1.7)
A 		43.2
(-2)
A 		20
(-3)
A 		165.1
(3)
P 		145
C 52.6
(-2.1)
A 		7.3
(-3)
A 		81.4
(-1.6)
A 		319.5
(3)
P 		312
avr 53.8
(-2.3) 		29.1
(-3) 		42.7
(-2.6) 		242.1
(3) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 37
(-0)
A 		18.5
(-1.8)
A 		50.8
(1.3)
A 		68.6
(3)
A 		5.6
(-3)
A 		32
(-0.5)
A 		63
B 56.5
(0.2)
A 		43.6
(-0.9)
A 		53.5
(-0.1)
A 		50.5
(-0.3)
A 		18.1
(-3)
A 		90.4
(3)
P 		72
C 63.4
(1.8)
A 		74.5
(3)
A 		29.5
(-1.7)
A 		17.3
(-3)
A 		36.6
(-1)
A 		59.5
(1.4)
A 		57
avr 52.3
(1.8) 		45.5
(0.8) 		44.6
(0.6) 		45.5
(0.8) 		20.1
(-3) 		60.6
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 20.8
(-0.1)
A 		8
(-2.8)
A 		7
(-3)
A 		35.4
(3)
P 		28
B 16.5
(-0.7)
A 		10.7
(-1.8)
A 		4.6
(-3)
A 		35.2
(3)
P 		31
C 17.4
(-1.2)
A 		2.1
(-3)
A 		28.4
(0)
A 		53.9
(3)
P 		52
avr 18.2
(-1) 		6.9
(-3) 		13.3
(-1.9) 		41.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 6.8
(-1.1)
A 		6.6
(-1.1)
A 		11.1
(0.6)
A 		17.4
(3)
A 		1.7
(-3)
A 		7.8
(-0.7)
A 		16
B 19.7
(-0.2)
A 		14.5
(-1.4)
A 		13
(-1.7)
A 		13.4
(-1.6)
A 		7.4
(-3)
A 		33.7
(3)
P 		26
C 23.5
(3)
A 		22.7
(2.8)
A 		7.5
(-1.8)
A 		3.5
(-3)
A 		11.8
(-0.5)
A 		19.9
(1.9)
A 		20
avr 16.7
(1.3) 		14.6
(0.4) 		10.5
(-1.4) 		11.4
(-1) 		7
(-3) 		20.5
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28107
Sequence Type Exemplar sequence
Representative Public ID F22D6.7 NCBI
Target Description F22D6.7_rc /REP_DB=WormBase Gene ID /WP=CE05688 /TR=Q19728 /GB=CAA95815.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059611
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059611 NCBI Caenorhabditis elegans F22D6.9 (F22D6.9) mRNA, complete cds. None
F22D6.9 ENSEMBL cdna:known chromosome:CEL140:I:7107963:7109893:1 gene:F22D6.9 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059610 11/11 Negative Strand Matching Probes A B 
F22D6.7 11/11 Negative Strand Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7107829-7107964(+) 76.3 100.0
chrIII:6985226-6985361(+) 74.81 98.52
chrIII:11940103-11940227(+) 90.37 90.37
chrIII:11939224-11939348(-) 90.37 90.37
chrIII:6982035-6982159(-) 90.37 90.37
chrIII:4749292-4749416(-) 90.37 90.37
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Ensembl F22D6.9
Entrez Gene 184829 Entrez gene
SwissProt Q27494 EMBL-EBI
WormBase CE24913 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95811 Hypothetical protein F22D6.9 [Caenorhabditis elegans] ref|NP_492012.1| F22D6.9 [Caenorhabditis elegans] 0.0
blast CAE73095 Hypothetical protein CBG20474 [Caenorhabditis briggsae] 0.0
blast CAB01164 Hypothetical protein F23B12.1 [Caenorhabditis elegans] ref|NP_506574.1| F23B12.1 [Caenorhabditis elegans] 5.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.1E-29
Sequence
Target Sequence 
>C. ELEGANS:172693_AT
ctacggtatgtgtggatgtcgagaaatgcggagaaattgcggagaaattgcgaatttcac
gtcatttctcgtcatttctctgcacacttgcattgcaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACGGTATGTGTGGATGTCGAGAA 615 225 13 Antisense
GTGTGGATGTCGAGAAATGCGGAGA 543 487 22 Antisense
AGAAATGCGGAGAAATTGCGGAGAA 581 69 34 Antisense
GAAATTGCGGAGAAATTGCGAATTT 260 363 45 Antisense
ATTGCGAATTTCACGTCATTTCTCG 500 5 59 Antisense
GCGAATTTCACGTCATTTCTCGTCA 399 289 62 Antisense
GAATTTCACGTCATTTCTCGTCATT 636 325 64 Antisense
ATTTCACGTCATTTCTCGTCATTTC 598 15 66 Antisense
TCATTTCTCTGCACACTTGCATTGC 70 621 84 Antisense
ATTTCTCTGCACACTTGCATTGCAA 232 17 86 Antisense
TCTCTGCACACTTGCATTGCAAAAA 223 611 89 Antisense
Sequence Source Affymetrix Proprietary Database