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[172691_x_at]

Description T28D9.11 /REP_DB=WormBase Gene ID /WP=CE02066 /TR=SW:Q10027 /GB=AAA68315.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2
(-3)
A 		3.2
(-2.3)
A 		3.2
(-2.3)
A 		12.8
(3)
A 		11
B 2
(-3)
A 		2.4
(-0.6)
A 		3
(3)
A 		2.7
(1.2)
A 		1
C 2.3
(-2)
A 		4.4
(3)
A 		1.9
(-3)
A 		2.5
(-1.6)
A 		3
avr 2.1
(-3) 		3.3
(-1.2) 		2.7
(-2.1) 		6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.6
(-0.6)
A 		1.6
(-3)
A 		3.2
(0.8)
A 		1.8
(-2.5)
A 		2
(-2)
A 		4.1
(3)
A 		3
B 1.6
(-3)
A 		2.2
(-1)
A 		3.4
(3)
A 		2.2
(-1)
A 		1.8
(-2.3)
A 		2.2
(-1)
A 		2
C 1.5
(-2.9)
A 		1.9
(-2.6)
A 		2.1
(-2.4)
A 		8.7
(3)
A 		2
(-2.5)
A 		1.4
(-3)
A 		7
avr 1.9
(-3) 		1.9
(-3) 		2.9
(-0.4) 		4.2
(3) 		1.9
(-3) 		2.6
(-1.2) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.7
(-3)
A 		0.7
(-3)
A 		0.8
(-2.5)
A 		1.9
(3)
A 		1
B 0.6
(-3)
A 		0.6
(-3)
A 		0.7
(3)
A 		0.6
(-3)
A 		0
C 0.8
(-0.3)
A 		1.3
(3)
A 		0.7
(-1)
A 		0.4
(-3)
A 		1
avr 0.7
(-3) 		0.9
(1) 		0.7
(-3) 		1
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.6
(-1.8)
A 		0.7
(-0.6)
A 		0.5
(-3)
A 		0.6
(-1.8)
A 		1
(3)
A 		1
B 0.5
(-3)
A 		0.7
(1)
A 		0.8
(3)
A 		0.6
(-1)
A 		0.7
(1)
A 		0.8
(3)
A 		0
C 0.6
(-2.5)
A 		0.6
(-2.5)
A 		0.5
(-3)
A 		1.8
(3)
A 		0.6
(-2.5)
A 		0.5
(-3)
A 		1
avr 0.5
(-3) 		0.6
(-1.8) 		0.7
(-0.6) 		1
(3) 		0.6
(-1.8) 		0.8
(0.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172691_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4809
Sequence Type Exemplar sequence
Representative Public ID T28D9.11 NCBI
Target Description T28D9.11 /REP_DB=WormBase Gene ID /WP=CE02066 /TR=SW:Q10027 /GB=AAA68315.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062910 NCBI Caenorhabditis elegans T28D9.11 (T28D9.11) mRNA, complete cds. 11/11 None
T28D9.11 ENSEMBL cdna:known chromosome:CEL140:II:6491403:6491940:-1 gene:T28D9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6491399-6491937(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28D9.11
Entrez Gene 189046 Entrez gene
SwissProt Q10027 EMBL-EBI
WormBase CE02066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68315 Hypothetical protein T28D9.11 [Caenorhabditis elegans] ref|NP_495311.1| T28D9.11 [Caenorhabditis elegans] sp|Q10027|YSXB_CAEEL Hypothetical protein T28D9.11 in chromosome II 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:172691_X_AT
aggagagcctcaatgcgatggccgcgagtttcgaattgcctcgtcgccggcaagagaacg
agaggacgacaacgaaacggccccgccccaaacgtcggctgcgcaagagcctctcgtcga
ctgctttcttggcactgtgccaaattcatgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGAGCCTCAATGCGATGGCCGC 592 55 24 Antisense
TCAATGCGATGGCCGCGAGTTTCGA 506 631 33 Antisense
GCGATGGCCGCGAGTTTCGAATTGC 685 289 38 Antisense
ATGGCCGCGAGTTTCGAATTGCCTC 541 53 41 Antisense
CGCGAGTTTCGAATTGCCTCGTCGC 459 253 46 Antisense
TTGCCTCGTCGCCGGCAAGAGAACG 216 703 59 Antisense
GTCGCCGGCAAGAGAACGAGAGGAC 191 473 66 Antisense
GAACGAGAGGACGACAACGAAACGG 308 347 79 Antisense
CCAAACGTCGGCTGCGCAAGAGCCT 385 275 111 Antisense
ACTGCTTTCTTGGCACTGTGCCAAA 232 97 143 Antisense
TGGCACTGTGCCAAATTCATGCTTC 142 547 153 Antisense
Sequence Source Affymetrix Proprietary Database