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[172690_x_at]

Description F12A10.6 /REP_DB=WormBase Gene ID /WP=CE01909 /TR=SW:Q09947 /GB=AAA68299.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 73.1
(0.4)
A 		39.6
(-1.3)
A 		5.4
(-3)
A 		123.5
(3)
A 		118
B 61.9
(2.4)
A 		31.5
(-3)
A 		34.1
(-2.5)
A 		65.1
(3)
A 		34
C 21.4
(-2.1)
A 		10.6
(-3)
A 		17.6
(-2.4)
A 		83.6
(3)
A 		73
avr 52.1
(-0.2) 		27.2
(-2.3) 		19
(-3) 		90.7
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 93.8
(3)
M 		50.9
(-1.7)
A 		38.7
(-3)
A 		56.9
(-1)
A 		75.3
(1)
A 		72.7
(0.7)
A 		55
B 16.1
(-3)
A 		60.8
(0.6)
A 		50.1
(-0.3)
A 		91.6
(3)
A 		34.2
(-1.6)
A 		55.6
(0.1)
P 		76
C 44.3
(1.2)
A 		28.2
(-3)
A 		42
(0.6)
A 		51.2
(3)
A 		32.9
(-1.8)
A 		41.7
(0.5)
A 		23
avr 51.4
(-1) 		46.6
(-2.2) 		43.6
(-3) 		66.6
(3) 		47.5
(-2) 		56.7
(0.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.6
(3)
A 		8.6
(-1.3)
A 		1.4
(-3)
A 		18.1
(1)
A 		25
B 19.7
(3)
A 		7.8
(-3)
A 		7.9
(-2.9)
A 		13.9
(0.1)
A 		12
C 7.1
(-0.8)
A 		3.1
(-3)
A 		6.1
(-1.4)
A 		14.1
(3)
A 		11
avr 17.8
(3) 		6.5
(-2.3) 		5.1
(-3) 		15.4
(1.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 17.3
(0.7)
M 		18.1
(1.1)
A 		8.4
(-3)
A 		14.4
(-0.5)
A 		22.7
(3)
A 		17.7
(0.9)
A 		14
B 5.6
(-3)
A 		20.2
(1.7)
A 		12.2
(-0.9)
A 		24.3
(3)
A 		13.9
(-0.3)
A 		20.7
(1.8)
P 		19
C 16.4
(3)
A 		8.6
(-3)
A 		10.7
(-1.4)
A 		10.3
(-1.7)
A 		10.6
(-1.5)
A 		14
(1.2)
A 		8
avr 13.1
(-0.7) 		15.6
(1.4) 		10.4
(-3) 		16.3
(2) 		15.7
(1.5) 		17.5
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172690_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4717
Sequence Type Exemplar sequence
Representative Public ID F12A10.6 NCBI
Target Description F12A10.6 /REP_DB=WormBase Gene ID /WP=CE01909 /TR=SW:Q09947 /GB=AAA68299.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062645 NCBI Caenorhabditis elegans F12A10.6 (F12A10.6) mRNA, complete cds. 11/11 None
F12A10.6 ENSEMBL cdna:known chromosome:CEL140:II:5494055:5494475:-1 gene:F12A10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062646 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000039123 1/11 Cross Hyb Matching Probes None
SNAP00000033521 3/11 Cross Hyb Matching Probes None
SNAP00000033523 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033528 8/11 Cross Hyb Matching Probes None
GENEFINDER00000033534 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023481 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035239 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005530 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016172 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042367 1/11 Cross Hyb Matching Probes None
F12A10.2 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5494052-5494473(-) 43.39 100.0
Public Domain and Genome References
Gene Title
Ensembl F12A10.6
Entrez Gene 184374 Entrez gene
SwissProt Q09947 EMBL-EBI
WormBase CE01909 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68299 Hypothetical protein F12A10.6 [Caenorhabditis elegans] ref|NP_495046.1| F12A10.6 [Caenorhabditis elegans] sp|Q09947|YSH6_CAEEL Hypothetical protein F12A10.6 in chromosome II 1.0E-68
blast AAG00045 Hypothetical protein ZK177.2 [Caenorhabditis elegans] ref|NP_495058.1| ZK177.2 [Caenorhabditis elegans] sp|Q09371|YS42_CAEEL Hypothetical protein ZK177.2 in chromosome II 3.0E-15
blast T15259 hypothetical protein F59E12.6 - Caenorhabditis elegans 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:172690_X_AT
gttttacaatgttttccactcatttttttgtgaaatttttgaaaaaaaactttcacagtt
gcagatgctagccgatccggagcgtcacgacatcagcaaattgcacacagtcgcgaaacg
catcggtcataatttgaacggaagtaaaagggataaagagaaagtccggcaagctgttga
aatggtgggagcggccaaaattttcaattccggcaatttgccgatttgttggaaatttca
attccggcaatttgccgatttgccggaaaattcaattccagcaatttgccgatttgccgg
aaaaaatcgtttgccgcccacctctaattttcataatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTACAATGTTTTCCACTCATTT 78 449 15 Antisense
TGTTTTCCACTCATTTTTTTGTGAA 490 561 24 Antisense
ACAGTTGCAGATGCTAGCCGATCCG 304 107 69 Antisense
TCCGGAGCGTCACGACATCAGCAAA 210 593 90 Antisense
TCAGCAAATTGCACACAGTCGCGAA 457 623 107 Antisense
TCGCGAAACGCATCGGTCATAATTT 304 595 125 Antisense
GAGAAAGTCCGGCAAGCTGTTGAAA 218 391 172 Antisense
GCGGCCAAAATTTTCAATTCCGGCA 543 287 205 Antisense
GCAATTTGCCGATTTGCCGGAAAAT 99 323 261 Antisense
TCCAGCAATTTGCCGATTTGCCGGA 139 589 291 Antisense
CGCCCACCTCTAATTTTCATAATAT 244 257 329 Antisense
Sequence Source Affymetrix Proprietary Database