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[172689_x_at]

Description ZC410.6 /REP_DB=WormBase Gene ID /WP=CE03810 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q23299 protein_id:CAA92569.1
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 15      6grp_total > 11      4grp_total > 04      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33276
1 2 3 4 range
A 5703
(-2.4)
P 		2976.3
(-2.9)
P 		2664.8
(-3)
P 		35549.7
(3)
P 		32885
B 9659.1
(0.1)
P 		4297.9
(-2.6)
P 		3477.2
(-3)
P 		15612
(3)
P 		12135
C 7479.7
(-2)
P 		3283.3
(-2.8)
P 		2273.7
(-3)
P 		32810.7
(3)
P 		30537
avr 7613.9
(-1.9) 		3519.2
(-2.8) 		2805.2
(-3) 		27990.8
(3) 		25186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14240
1 2 3 4 5 6 range
A 4779.6
(-1.4)
P 		3335.9
(-2.1)
P 		14155.3
(3)
P 		1922.5
(-2.8)
P 		5355.7
(-1.1)
P 		1412.7
(-3)
P 		12743
B 5288.7
(0.6)
P 		7502.1
(3)
P 		6691
(2.1)
P 		2546.8
(-2.4)
P 		3354
(-1.5)
P 		1998.6
(-3)
P 		5504
C 2131.9
(-2.5)
P 		15159.7
(3)
P 		1788.6
(-2.6)
P 		3763.7
(-1.8)
P 		919.8
(-3)
P 		2403
(-2.4)
P 		14240
avr 4066.7
(-1.1) 		8665.9
(3) 		7545
(2) 		2744.3
(-2.3) 		3209.8
(-1.9) 		1938.1
(-3) 		6728
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4886
1 2 3 4 range
A 2076.5
(-1.1)
P 		646.1
(-3)
P 		696.6
(-2.9)
P 		5203.8
(3)
P 		4558
B 3080.2
(2.4)
P 		1061.5
(-2.4)
P 		805.7
(-3)
P 		3326.9
(3)
P 		2521
C 2476
(-0.9)
P 		944
(-2.8)
P 		792.5
(-3)
P 		5532.4
(3)
P 		4740
avr 2544.2
(-0.3) 		883.9
(-2.8) 		764.9
(-3) 		4687.7
(3) 		3923

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4328
1 2 3 4 5 6 range
A 881.1
(-1.8)
P 		1186.4
(-1.2)
P 		3082.7
(3)
P 		487.6
(-2.7)
P 		1616.1
(-0.2)
P 		343.9
(-3)
P 		2739
B 1840.2
(0.8)
P 		2497.1
(3)
P 		1624.8
(0.1)
P 		674.6
(-3)
P 		1362.7
(-0.7)
P 		745.3
(-2.8)
P 		1823
C 790.2
(-2.3)
P 		4625.7
(3)
P 		455.2
(-2.8)
P 		756.9
(-2.4)
P 		297.6
(-3)
P 		804.4
(-2.3)
P 		4328
avr 1170.5
(-1.5) 		2769.7
(3) 		1720.9
(0.1) 		639.7
(-3) 		1092.1
(-1.7) 		631.2
(-3) 		2139
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172689_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9450
Sequence Type Exemplar sequence
Representative Public ID ZC410.6 NCBI
Target Description ZC410.6 /REP_DB=WormBase Gene ID /WP=CE03810 /CHR=4 /FEA=Sanger Annotation /DEF=(HINXTON) TR:Q23299 protein_id:CAA92569.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030920 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9066158:9067949:1 10/11 None
GENEFINDER00000030940 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9066158:9067582:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078276 3/11 Cross Hyb Matching Probes A 
NM_062430 1/11 Cross Hyb Matching Probes A 
NR_002374 1/11 Cross Hyb Matching Probes None
SNAP00000010958 6/11 Cross Hyb Matching Probes None
GENEFINDER00000002760 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029225 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029150 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029147 1/11 Cross Hyb Matching Probes None
SNAP00000003365 4/11 Cross Hyb Matching Probes None
GENEFINDER00000003374 4/11 Cross Hyb Matching Probes None
SNAP00000005190 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005214 1/11 Cross Hyb Matching Probes None
SNAP00000017447 3/11 Cross Hyb Matching Probes None
GENEFINDER00000017471 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024356 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024357 2/11 Cross Hyb Matching Probes None
SNAP00000029285 7/11 Cross Hyb Matching Probes None
SNAP00000029286 7/11 Cross Hyb Matching Probes None
GENEFINDER00000029298 7/11 Cross Hyb Matching Probes None
SNAP00000042947 4/11 Cross Hyb Matching Probes None
GENEFINDER00000042954 4/11 Cross Hyb Matching Probes None
SNAP00000041767 1/11 Cross Hyb Matching Probes None
SNAP00000013902 1/11 Cross Hyb Matching Probes None
GENEFINDER00000013906 3/11 Cross Hyb Matching Probes None
SNAP00000013903 2/11 Cross Hyb Matching Probes None
SNAP00000031960 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031976 2/11 Cross Hyb Matching Probes None
SNAP00000031963 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031978 2/11 Cross Hyb Matching Probes None
SNAP00000001448 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001469 1/11 Cross Hyb Matching Probes None
SNAP00000004117 2/11 Cross Hyb Matching Probes None
SNAP00000019190 3/11 Cross Hyb Matching Probes None
GENEFINDER00000019201 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030894 1/11 Cross Hyb Matching Probes None
SNAP00000037535 2/11 Cross Hyb Matching Probes None
GENEFINDER00000037541 2/11 Cross Hyb Matching Probes None
SNAP00000014726 2/11 Cross Hyb Matching Probes None
SNAP00000028756 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028763 4/11 Cross Hyb Matching Probes None
SNAP00000031107 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031114 2/11 Cross Hyb Matching Probes None
SNAP00000006574 4/11 Cross Hyb Matching Probes None
SNAP00000025925 6/11 Cross Hyb Matching Probes None
GENEFINDER00000025928 6/11 Cross Hyb Matching Probes None
SNAP00000032397 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032410 2/11 Cross Hyb Matching Probes None
T05A7.9 1/11 Cross Hyb Matching Probes R A 
T25D1.3 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.2E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 0.0033
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.7E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.0E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.8E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.0E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.6E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.1E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.4E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 7.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 6.1E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.5E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 6.7E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.4E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030920 7 183-205,226-248,268-290,302-324,344-363,376-398,418-440
Sequence
Target Sequence 
>C. ELEGANS:172689_X_AT
ccacgatgggtctcaccacgaaaggtctcgccacaatgggtctcaccacgatgggtctca
ccacgaagggtttcaccacgatgggtctcaccacgaagggtctcaccacgaagggtttca
ccacgatgggtctcaccacgatgggtctcaccacgatgggtctcaccacgaagggtctca
ccacgatgggtctcaccacgatgggtctcaccacgaagggtctcaccacgaagggtctca
ccacgaaaggtctcgccacaatgggtctcaccacgatgggtctcaccacgatgggtctca
ccacgaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGATGGGTCTCACCACGAAAGG 325 275 68 Antisense
CGATGGGTCTCACCACGAAAGGTCT 701 247 71 Antisense
CACAATGGGTCTCACCACGATGGGT 537 193 99 Antisense
ATGGGTCTCACCACGAAGGGTTTCA 605 1 118 Antisense
CCACGAAGGGTTTCACCACGATGGG 209 275 128 Antisense
GTCTCACCACGAAGGGTTTCACCAC 543 469 167 Antisense
CGAAGGGTTTCACCACGATGGGTCT 196 251 176 Antisense
GAAGGGTCTCACCACGAAAGGTCTC 585 333 297 Antisense
ACGAAAGGTCTCGCCACAATGGGTC 519 91 310 Antisense
ACAATGGGTCTCACCACGATGGGTC 490 113 325 Antisense
CCACGATGGGTCTCACCACGAATGG 326 275 353 Antisense
Sequence Source Affymetrix Proprietary Database