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[172686_x_at]

Description F12A10.7 /REP_DB=WormBase Gene ID /WP=CE01910 /TR=SW:P50438 /GB=AAA68300.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 29.2
(-2)
A 		14.9
(-3)
A 		18
(-2.8)
A 		101.1
(3)
A 		86
B 33.2
(-2)
A 		27.3
(-2.3)
A 		13.9
(-3)
A 		126.9
(3)
P 		113
C 39.7
(-1.3)
P 		5
(-3)
A 		4
(-3)
A 		131.1
(3)
P 		127
avr 34
(-1.8) 		15.7
(-2.8) 		12
(-3) 		119.7
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 66.4
(0.8)
M 		6.2
(-3)
A 		67
(0.8)
P 		20.2
(-2.1)
A 		31.7
(-1.4)
P 		101.8
(3)
P 		96
B 29.1
(-1.6)
A 		5.8
(-3)
A 		48
(-0.5)
P 		32.3
(-1.4)
A 		34.3
(-1.3)
A 		107.4
(3)
P 		102
C 68.7
(0.2)
A 		4.8
(-3)
A 		62.3
(-0.2)
P 		42.9
(-1.1)
A 		51.6
(-0.7)
P 		126.3
(3)
P 		122
avr 54.7
(-0.2) 		5.6
(-3) 		59.1
(0) 		31.8
(-1.5) 		39.2
(-1.1) 		111.8
(3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 10.6
(0.8)
A 		3.2
(-3)
A 		4.7
(-2.2)
A 		14.8
(3)
A 		12
B 10.6
(-1.1)
A 		6.7
(-2.1)
A 		3.2
(-3)
A 		27
(3)
P 		24
C 13.2
(0.4)
P 		1.4
(-3)
A 		1.4
(-3)
A 		22.1
(3)
P 		21
avr 11.5
(-0.2) 		3.8
(-2.8) 		3.1
(-3) 		21.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 12.2
(-0.3)
M 		2.2
(-3)
A 		14.6
(0.3)
P 		5.1
(-2.2)
A 		9.6
(-1)
P 		24.8
(3)
P 		23
B 10.1
(-1.7)
A 		1.9
(-3)
A 		11.6
(-1.5)
P 		8.6
(-1.9)
A 		13.9
(-1.1)
A 		40
(3)
P 		38
C 25.5
(0.5)
A 		1.5
(-3)
A 		15.9
(-0.9)
P 		8.6
(-2)
A 		16.7
(-0.8)
P 		42.3
(3)
P 		41
avr 15.9
(-0.5) 		1.9
(-3) 		14
(-0.9) 		7.4
(-2) 		13.4
(-1) 		35.7
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172686_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5277
Sequence Type Exemplar sequence
Representative Public ID F12A10.7 NCBI
Target Description F12A10.7 /REP_DB=WormBase Gene ID /WP=CE01910 /TR=SW:P50438 /GB=AAA68300.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062648 NCBI Caenorhabditis elegans F12A10.7 (F12A10.7) mRNA, complete cds. 11/11 None
SNAP00000033525 ENSEMBL cdna:SNAP chromosome:CEL140:II:5497323:5498224:-1 9/11 None
GENEFINDER00000033532 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5497323:5498224:-1 9/11 None
F12A10.7 ENSEMBL cdna:known chromosome:CEL140:II:5497316:5497648:-1 gene:F12A10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5497313-5497646(-) 91.09 100.0
Public Domain and Genome References
Gene Title
Ensembl F12A10.7
Entrez Gene 184375 Entrez gene
SwissProt P50438 EMBL-EBI
WormBase CE01910 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68300 Hypothetical protein F12A10.7 [Caenorhabditis elegans] ref|NP_495049.1| F12A10.7 [Caenorhabditis elegans] sp|P50438|YSH7_CAEEL Hypothetical protein F12A10.7 in chromosome II 3.0E-32
Sequence
Target Sequence 
>C. ELEGANS:172686_X_AT
gacaccacgtgttttggcaagattcaaaacatcgcgaaaaacgatatggtggatggggag
gtggatatccctacggcggctacggtggatatggtggaggttacggtggcggatatggag
gcggatacggaggagggtatggcggacgatatggcggaaactatggaagcagctcatggg
gatcatattcgagttatagttctggtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACCACGTGTTTTGGCAAGATTC 638 367 25 Antisense
GGCAAGATTCAAAACATCGCGAAAA 90 533 40 Antisense
TGGGGAGGTGGATATCCCTACGGCG 560 513 78 Antisense
CCTACGGCGGCTACGGTGGATATGG 689 265 94 Antisense
TATGGTGGAGGTTACGGTGGCGGAT 501 51 114 Antisense
GGTGGCGGATATGGAGGCGGATACG 107 499 129 Antisense
ACGGAGGAGGGTATGGCGGACGATA 56 3 151 Antisense
GTATGGCGGACGATATGGCGGAAAC 49 455 161 Antisense
TGGCGGAAACTATGGAAGCAGCTCA 487 545 176 Antisense
GAAGCAGCTCATGGGGATCATATTC 233 341 190 Antisense
ATATTCGAGTTATAGTTCTGGTGGA 204 17 209 Antisense
Sequence Source Affymetrix Proprietary Database