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[172684_x_at]

Description F23F12.7 /REP_DB=WormBase Gene ID /WP=CE01254 /TR=SW:P46503 /GB=AAA20609.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 24      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 2.9
(-3)
A 		41.2
(3)
P 		33.2
(1.7)
A 		23.9
(0.3)
A 		38
B 20.2
(0.3)
A 		2.6
(-3)
A 		24.7
(1.1)
A 		34.9
(3)
P 		32
C 10.6
(-3)
A 		22.2
(-0.9)
A 		18.3
(-1.6)
A 		44.5
(3)
P 		34
avr 11.2
(-3) 		22
(-0.2) 		25.4
(0.7) 		34.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2.8
(-2.7)
A 		11
(-1.3)
A 		35.5
(3)
A 		1.8
(-2.9)
A 		10
(-1.5)
A 		1.3
(-3)
A 		34
B 2.6
(-2.8)
A 		16.4
(-0.6)
A 		38.5
(3)
A 		1.3
(-3)
A 		4.6
(-2.5)
A 		7.5
(-2)
A 		37
C 12.4
(-2.3)
A 		21.4
(-0.2)
A 		35.3
(3)
A 		9.2
(-3)
A 		14
(-1.9)
A 		15.8
(-1.5)
A 		26
avr 5.9
(-2.7) 		16.3
(-0.7) 		36.4
(3) 		4.1
(-3) 		9.5
(-2) 		8.2
(-2.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.1
(-3)
A 		8.9
(3)
P 		8.7
(2.8)
A 		3.5
(-1.2)
A 		8
B 6.4
(2.1)
A 		0.6
(-3)
A 		5.7
(1.5)
A 		7.4
(3)
P 		7
C 3.5
(-3)
A 		6.4
(1.4)
A 		6.4
(1.4)
A 		7.5
(3)
P 		4
avr 3.7
(-3) 		5.3
(-0) 		6.9
(3) 		6.1
(1.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.5
(-2.8)
A 		3.9
(-0.1)
A 		7.7
(3)
A 		0.5
(-2.8)
A 		3
(-0.8)
A 		0.3
(-3)
A 		7
B 0.9
(-2.6)
A 		5.5
(0.5)
A 		9.3
(3)
A 		0.3
(-3)
A 		1.9
(-1.9)
A 		2.8
(-1.3)
A 		9
C 4.6
(-0.7)
A 		6.5
(0.9)
A 		9
(3)
A 		1.9
(-3)
A 		4.5
(-0.8)
A 		5.3
(-0.1)
A 		7
avr 2
(-2.2) 		5.3
(0.4) 		8.7
(3) 		0.9
(-3) 		3.1
(-1.3) 		2.8
(-1.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172684_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6467
Sequence Type Exemplar sequence
Representative Public ID F23F12.7 NCBI
Target Description F23F12.7 /REP_DB=WormBase Gene ID /WP=CE01254 /TR=SW:P46503 /GB=AAA20609.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066027(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066027 NCBI Caenorhabditis elegans F23F12.7 (F23F12.7) mRNA, complete cds. 11/11 None
SNAP00000039901 ENSEMBL cdna:SNAP chromosome:CEL140:III:6484374:6488810:1 11/11 None
GENEFINDER00000039914 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6488569:6491113:1 11/11 None
F23F12.7 ENSEMBL cdna:known chromosome:CEL140:III:6488569:6488810:1 gene:F23F12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6488567-6488809(+) 93.85 100.0
Public Domain and Genome References
Ensembl F23F12.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAZ32811 Hypothetical protein F23F12.8 [Caenorhabditis elegans] 0.0
blast NP_498427 F23F12.8 [Caenorhabditis elegans] sp|P46504|YLX8_CAEEL Hypothetical protein F23F12.8 in chromosome III precursor 0.0
blast CAE64408 Hypothetical protein CBG09100 [Caenorhabditis briggsae] 0.0
blast NP_498429 proteasome Regulatory Particle, ATPase-like family member (rpt-3) [Caenorhabditis elegans] gb|AAA20608.1| Proteasome regulatory particle, atpase-like protein 3 [Caenorhabditis elegans] sp|P46502|PRS6B_CAEEL Probable 26S protease regulatory subunit 6B 0.0
blast CAE64409 Hypothetical protein CBG09101 [Caenorhabditis briggsae] 0.0
blast CAE61029 Hypothetical protein CBG04772 [Caenorhabditis briggsae] 0.0
blast NP_498428 F23F12.7 [Caenorhabditis elegans] sp|P46503|YLX7_CAEEL Hypothetical protein F23F12.7 in chromosome III 2.0E-28
blast AAZ32811 Hypothetical protein F23F12.8 [Caenorhabditis elegans] 2.0E-28
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 2.09999990463257
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 7.2E-88
Sequence
Target Sequence 
>C. ELEGANS:172684_X_AT
atgcacgatgaaaactctggagctcaatcacttggaagtgtagtcaagcctgtgcttaaa
aagatcgctctgaaccaaactgaacagttcttggatcgtttattggctgatcaaaaaaac
gatgagaagctacgaaaagaaacaattgatcggctaaagtcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCACGATGAAAACTCTGGAGCTC 390 43 13 Antisense
AAACTCTGGAGCTCAATCACTTGGA 230 127 24 Antisense
TCTGGAGCTCAATCACTTGGAAGTG 485 607 28 Antisense
GGAAGTGTAGTCAAGCCTGTGCTTA 587 531 46 Antisense
GCCTGTGCTTAAAAAGATCGCTCTG 282 283 60 Antisense
AAAAGATCGCTCTGAACCAAACTGA 595 131 71 Antisense
AGATCGCTCTGAACCAAACTGAACA 493 65 74 Antisense
AACTGAACAGTTCTTGGATCGTTTA 60 139 90 Antisense
ACAGTTCTTGGATCGTTTATTGGCT 173 107 96 Antisense
GTTCTTGGATCGTTTATTGGCTGAT 121 445 99 Antisense
AAACAATTGATCGGCTAAAGTCATC 595 127 152 Antisense
Sequence Source Affymetrix Proprietary Database