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[172682_x_at]

Description ZC155.6 /REP_DB=WormBase Gene ID /WP=CE15060 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01637 protein_id:AAB52705.1
Cluster 6grp_total > 96      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 7.7
(-3)
A 		29
(-1.7)
A 		28.9
(-1.7)
A 		108.5
(3)
P 		101
B 3.6
(-3)
A 		21.9
(-0.8)
A 		35.9
(0.9)
A 		52.7
(3)
P 		49
C 13.8
(-3)
A 		20.2
(-1.8)
A 		30.7
(0.3)
M 		44.7
(3)
P 		31
avr 8.4
(-3) 		23.7
(-1.5) 		31.8
(-0.7) 		68.6
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 28.8
(-3)
A 		31.9
(-2.9)
A 		47.1
(-2.1)
P 		83.6
(-0.4)
P 		138.5
(2.2)
P 		155.6
(3)
P 		127
B 6.7
(-3)
A 		25.2
(-2.3)
A 		51.5
(-1.2)
P 		93.7
(0.5)
M 		146.4
(2.6)
P 		157.5
(3)
P 		151
C 30
(-3)
P 		28.9
(-3)
A 		34.8
(-2.8)
A 		87.8
(-0.7)
P 		161.6
(2.1)
P 		185.7
(3)
P 		157
avr 21.8
(-3) 		28.7
(-2.7) 		44.5
(-2.1) 		88.4
(-0.2) 		148.8
(2.3) 		166.3
(3) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.8
(-3)
A 		6.3
(-1.4)
A 		7.5
(-0.8)
A 		15.9
(3)
P 		13
B 1.2
(-3)
A 		5.4
(-0.5)
A 		8.3
(1.3)
A 		11.2
(3)
P 		10
C 4.6
(-3)
A 		5.8
(-1.8)
A 		10.7
(3)
M 		7.5
(-0.1)
P 		6
avr 2.9
(-3) 		5.8
(-1) 		8.8
(1.1) 		11.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 5.3
(-3)
A 		11.3
(-2)
A 		10.3
(-2.2)
P 		21.2
(-0.4)
P 		41.8
(3)
P 		37.9
(2.4)
P 		37
B 2.3
(-3)
A 		8.4
(-2.4)
A 		12.5
(-1.9)
P 		24.8
(-0.6)
M 		59.5
(3)
P 		58.7
(2.9)
P 		57
C 11.1
(-2.7)
P 		8.8
(-3)
A 		8.8
(-3)
A 		17.7
(-2)
P 		52.3
(1.9)
P 		62.2
(3)
P 		53
avr 6.2
(-3) 		9.5
(-2.6) 		10.5
(-2.4) 		21.2
(-1.1) 		51.2
(2.8) 		52.9
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172682_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7395
Sequence Type Exemplar sequence
Representative Public ID ZC155.6 NCBI
Target Description ZC155.6 /REP_DB=WormBase Gene ID /WP=CE15060 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01637 protein_id:AAB52705.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065705 NCBI Caenorhabditis elegans ZC155.4 (ZC155.4) mRNA, complete cds. 11/11 A 
SNAP00000027524 ENSEMBL cdna:SNAP chromosome:CEL140:III:5212142:5214961:-1 11/11 None
GENEFINDER00000027530 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5212142:5214961:-1 11/11 None
ZC155.4 ENSEMBL cdna:known chromosome:CEL140:III:5211964:5214962:-1 gene:ZC155.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5214659-5215109(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC155.4
Entrez Gene 175713 Entrez gene
SwissProt Q23244 EMBL-EBI
WormBase CE28154 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6071 glycerol metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8889 glycerophosphodiester phosphodiesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52706 Hypothetical protein ZC155.4 [Caenorhabditis elegans] ref|NP_498106.1| ZC155.4 [Caenorhabditis elegans] 0.0
blast CAB03386 Hypothetical protein T22G5.1 [Caenorhabditis elegans] ref|NP_506439.1| T22G5.1 [Caenorhabditis elegans] 1.0E-155
blast CAE56305 Hypothetical protein CBG23963 [Caenorhabditis briggsae] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 2.1E-53
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 9.7E-16
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 8.7E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498106.1 2 55-74,81-100
ZC155.4 2 55-74,81-100
SNAP00000027524 2 55-74,81-100
GENEFINDER00000027530 2 55-74,81-100
Sequence
Target Sequence 
>C. ELEGANS:172682_X_AT
atgtggacgagaacattctactcaatgatggtgggtacactactgcaattattcggccga
gaatttctacaactgacccagttatcaaaagatgatattacggatagttttgatgttcag
aagcttgtcacccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGGACGAGAACATTCTACTCAA 42 49 49 Antisense
TTCTACTCAATGATGGTGGGTACAC 253 685 64 Antisense
GATGGTGGGTACACTACTGCAATTA 121 407 75 Antisense
GTACACTACTGCAATTATTCGGCCG 295 459 83 Antisense
ACTACTGCAATTATTCGGCCGAGAA 511 101 87 Antisense
ATTCGGCCGAGAATTTCTACAACTG 490 9 99 Antisense
CGAGAATTTCTACAACTGACCCAGT 366 247 106 Antisense
AACTGACCCAGTTATCAAAAGATGA 21 141 119 Antisense
GATATTACGGATAGTTTTGATGTTC 589 425 142 Antisense
TTTGATGTTCAGAAGCTTGTCACCC 454 667 157 Antisense
GATGTTCAGAAGCTTGTCACCCAGC 497 409 160 Antisense
Sequence Source Affymetrix Proprietary Database