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[172681_x_at]

Description ZC581.5 /REP_DB=WormBase Gene ID /WP=CE15243 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01770 protein_id:AAB54143.1
Cluster 6grp_total > 37      4grp_total > 28      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 41.2
(-1.8)
P 		48.4
(-0.4)
A 		35.1
(-3)
A 		65.8
(3)
A 		31
B 41
(0.5)
A 		56.3
(3)
A 		18.9
(-3)
A 		45.4
(1.3)
P 		37
C 45.1
(0.5)
A 		30.6
(-1.2)
A 		15.4
(-3)
A 		66.6
(3)
P 		51
avr 42.4
(0.2) 		45.1
(0.6) 		23.1
(-3) 		59.3
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 32.7
(-0.5)
A 		36.8
(0.1)
A 		21.9
(-1.9)
A 		46.5
(1.3)
A 		13.6
(-3)
A 		59.2
(3)
A 		46
B 27.1
(0.1)
A 		24.7
(-0.4)
A 		40.8
(3)
P 		12
(-3)
A 		28.8
(0.5)
P 		16.8
(-2)
A 		29
C 45.9
(2.9)
A 		46.6
(3)
A 		3.7
(-3)
A 		3.4
(-3)
A 		25.5
(0.1)
A 		30.5
(0.8)
A 		43
avr 35.2
(2.7) 		36
(3) 		22.1
(-2.4) 		20.6
(-3) 		22.6
(-2.2) 		35.5
(2.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 15
(3)
P 		10.5
(-1.7)
A 		9.2
(-3)
A 		9.6
(-2.6)
A 		6
B 13.1
(2.5)
A 		13.9
(3)
A 		4.4
(-3)
A 		9.7
(0.3)
P 		10
C 14.9
(3)
A 		8.8
(-0.9)
A 		5.4
(-3)
A 		11.2
(0.7)
P 		10
avr 14.3
(3) 		11.1
(0.6) 		6.3
(-3) 		10.2
(-0.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6
(-1.9)
A 		13.1
(2.2)
A 		4.8
(-2.6)
A 		11.8
(1.5)
A 		4.1
(-3)
A 		14.4
(3)
A 		10
B 9.4
(1.4)
A 		8.2
(0.5)
A 		9.9
(1.7)
P 		3.2
(-3)
A 		11.7
(3)
P 		6.3
(-0.8)
A 		9
C 17
(3)
A 		14.2
(2)
A 		1
(-2.9)
A 		0.7
(-3)
A 		8.3
(-0.2)
A 		10.2
(0.5)
A 		16
avr 10.8
(2.1) 		11.8
(3) 		5.2
(-3) 		5.2
(-3) 		8
(-0.5) 		10.3
(1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172681_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1039
Sequence Type Exemplar sequence
Representative Public ID ZC581.5 NCBI
Target Description ZC581.5 /REP_DB=WormBase Gene ID /WP=CE15243 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O01770 protein_id:AAB54143.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059507(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059507 NCBI Caenorhabditis elegans D2092.1b (D2092.1) mRNA, complete cds. 10/11 A 
D2092.1b ENSEMBL cdna:known chromosome:CEL140:I:6637893:6645563:-1 gene:D2092.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015880 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172382 2 1 NM_059507 172681_x_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6645049-6645492(-) 58.5 100.0
Public Domain and Genome References
Ensembl D2092.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68288 Hypothetical protein D2092.1b [Caenorhabditis elegans] ref|NP_491908.1| D2092.1b [Caenorhabditis elegans] 0.0
blast AAB42222 Hypothetical protein D2092.1a [Caenorhabditis elegans] ref|NP_491909.1| D2092.1a [Caenorhabditis elegans] 0.0
blast CAE67249 Hypothetical protein CBG12689 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-26
Pfam IPR000008 EMBL-EBI C2 domain 2.5E-13
Pfam IPR000008 EMBL-EBI C2 domain 3.8E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491908.1 2 723-745,814-836
D2092.1b 2 723-745,814-836
Sequence
Target Sequence 
>C. ELEGANS:172681_X_AT
atgccgtgtttgcagttgattcgtcgtcgaaaaaagaaaaagaagaaggagcaacttgtg
cagatagttgaaaaaggagaaaatgaagacgagagaataatgatgaaaggaggaaagaat
gaggaagatcacgagaatgaagaagatgatgacaatgtggaaagttccttaattgggtgt
tccccattaacaagaaggcgaagaaaatctgcagcagttgggtttcaaaaattgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCGTGTTTGCAGTTGATTCGTC 552 41 13 Antisense
CCGTGTTTGCAGTTGATTCGTCGTC 356 265 16 Antisense
TGTTTGCAGTTGATTCGTCGTCGAA 436 561 19 Antisense
GAAGGAGCAACTTGTGCAGATAGTT 696 331 57 Antisense
GATGATGACAATGTGGAAAGTTCCT 440 409 157 Antisense
TGTGGAAAGTTCCTTAATTGGGTGT 119 551 168 Antisense
TAATTGGGTGTTCCCCATTAACAAG 42 631 182 Antisense
GTTCCCCATTAACAAGAAGGCGAAG 336 437 191 Antisense
GAAGGCGAAGAAAATCTGCAGCAGT 379 333 206 Antisense
AATCTGCAGCAGTTGGGTTTCAAAA 471 169 218 Antisense
AGCAGTTGGGTTTCAAAAATTGCAT 198 1 225 Antisense
Sequence Source Affymetrix Proprietary Database