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[172680_x_at]

Description F56C9.4 /REP_DB=WormBase Gene ID /WP=CE01323 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20861 protein_id:AAB08713.1
Cluster 6grp_high1_10_10 > 65      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_total > 47      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 117
(-2.1)
P 		103
(-2.6)
P 		89.7
(-3)
P 		276.9
(3)
P 		187
B 138.7
(-0.3)
P 		95.3
(-3)
P 		103.2
(-2.5)
P 		191.5
(3)
P 		96
C 147.2
(-1.4)
P 		77.3
(-3)
P 		93.1
(-2.6)
P 		334.9
(3)
P 		258
avr 134.3
(-1.6) 		91.9
(-3) 		95.3
(-2.9) 		267.8
(3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 126.9
(1.9)
P 		100.1
(-1.2)
P 		136.3
(3)
P 		84.6
(-3)
P 		99.2
(-1.3)
P 		109.1
(-0.2)
P 		52
B 152.9
(2.4)
P 		85.2
(-2.7)
P 		141.3
(1.5)
P 		151.8
(2.3)
P 		81.7
(-3)
P 		160.9
(3)
P 		79
C 83.7
(-1.3)
P 		130.3
(3)
M 		65.5
(-3)
P 		102.6
(0.4)
A 		85
(-1.2)
P 		108.3
(1)
P 		65
avr 121.2
(2.2) 		105.2
(-0.3) 		114.4
(1.1) 		113
(0.9) 		88.6
(-3) 		126.1
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 42.6
(3)
P 		22.4
(-3)
P 		23.5
(-2.7)
P 		40.5
(2.4)
P 		20
B 44.2
(3)
P 		23.5
(-3)
P 		23.9
(-2.9)
P 		40.8
(2)
P 		21
C 48.7
(1.6)
P 		22.2
(-3)
P 		32.5
(-1.2)
P 		56.5
(3)
P 		34
avr 45.2
(2.8) 		22.7
(-3) 		26.6
(-2) 		45.9
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 23.4
(-2.2)
P 		35.6
(3)
P 		29.7
(0.5)
P 		21.5
(-3)
P 		29.9
(0.6)
P 		26.6
(-0.8)
P 		14
B 53.2
(1.7)
P 		28.4
(-3)
P 		34.3
(-1.9)
P 		40.2
(-0.8)
P 		33.2
(-2.1)
P 		60
(3)
P 		32
C 31
(0.7)
P 		39.8
(3)
M 		16.7
(-3)
P 		20.6
(-2)
A 		27.5
(-0.2)
P 		36.2
(2.1)
P 		23
avr 35.9
(0.9) 		34.6
(0.3) 		26.9
(-3) 		27.4
(-2.8) 		30.2
(-1.6) 		40.9
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172680_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6941
Sequence Type Exemplar sequence
Representative Public ID F56C9.4 NCBI
Target Description F56C9.4 /REP_DB=WormBase Gene ID /WP=CE01323 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q20861 protein_id:AAB08713.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025955, NM_001025954
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000032862 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7307928:7308188:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025954 8/11 Cross Hyb Matching Probes None
NM_001025955 8/11 Cross Hyb Matching Probes None
SNAP00000032848 6/11 Cross Hyb Matching Probes None
B0361.2 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7307925-7308186(+) 83.14 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16467 hypothetical protein F56C9.4 - Caenorhabditis elegans 7.0E-34
blast AAX88837 Hypothetical protein B0361.2b [Caenorhabditis elegans] ref|NP_001021126.1| B0361.2b [Caenorhabditis elegans] 6.0E-24
blast AAK18872 Hypothetical protein B0361.2a [Caenorhabditis elegans] ref|NP_001021125.1| B0361.2a [Caenorhabditis elegans] sp|Q10946|YMP2_CAEEL Hypothetical protein B0361.2 in chromosome III 6.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR006767 EMBL-EBI Protein similar to CwfJ, C-terminal 2 4.8E-9
Sequence
Target Sequence 
>C. ELEGANS:172680_X_AT
ctcaaagacttcccttgtaaattcaattacctagtttttagaaaaataaaaatagaaaag
caatttaatttttttcaggaaataattgccggaatgcttgatctaccaccgaaaaagtgg
agaaaacgagaaaccgatgaaatgtcgaagcagaagtctcgtgctgaaaatttcaaaaag
ctctgggagccagttgattggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAAAGACTTCCCTTGTAAATTCA 224 227 40 Antisense
TTCCCTTGTAAATTCAATTACCTAG 648 697 49 Antisense
TTTTTCAGGAAATAATTGCCGGAAT 582 1 110 Antisense
ATTGCCGGAATGCTTGATCTACCAC 665 5 124 Antisense
GAATGCTTGATCTACCACCGAAAAA 390 331 131 Antisense
GAAAACGAGAAACCGATGAAATGTC 25 315 161 Antisense
GATGAAATGTCGAAGCAGAAGTCTC 582 411 175 Antisense
GTCGAAGCAGAAGTCTCGTGCTGAA 172 475 183 Antisense
GAAGTCTCGTGCTGAAAATTTCAAA 545 335 192 Antisense
GAAAATTTCAAAAAGCTCTGGGAGC 300 353 205 Antisense
AGCTCTGGGAGCCAGTTGATTGGAC 479 79 218 Antisense
Sequence Source Affymetrix Proprietary Database