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[172679_x_at] histone H4

Description F54E12.3 /REP_DB=WormBase Gene ID /WP=CE03252 /GB=CAB05210.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=histone H4
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 32      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1161
1 2 3 4 range
A 269.6
(-3)
P 		1177
(1.7)
P 		1425.6
(3)
P 		1271.2
(2.2)
P 		1156
B 264.7
(-3)
P 		863.7
(0.7)
P 		1223.9
(3)
P 		1041.3
(1.9)
P 		959
C 336.6
(-3)
P 		945.2
(1.2)
P 		1183
(2.8)
P 		1206.8
(3)
P 		870
avr 290.3
(-3) 		995.3
(1.3) 		1277.5
(3) 		1173.1
(2.4) 		987

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1016
1 2 3 4 5 6 range
A 331.2
(-3)
P 		333.4
(-3)
P 		399.6
(-2.5)
P 		650.8
(-0.5)
P 		766
(0.4)
P 		1101.8
(3)
P 		771
B 274.7
(-3)
P 		354.2
(-2.5)
P 		531.3
(-1.5)
P 		524.5
(-1.5)
P 		894.2
(0.7)
P 		1278.1
(3)
P 		1003
C 313.4
(-3)
P 		419.8
(-2.3)
P 		403
(-2.5)
P 		522.2
(-1.7)
P 		846.8
(0.3)
P 		1291
(3)
P 		978
avr 306.4
(-3) 		369.1
(-2.6) 		444.6
(-2.1) 		565.8
(-1.3) 		835.7
(0.5) 		1223.6
(3) 		917
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 98.2
(-3)
P 		255.5
(0.4)
P 		372.7
(3)
P 		186.1
(-1.1)
P 		275
B 84.4
(-3)
P 		213.3
(0.9)
P 		283.6
(3)
P 		221.9
(1.1)
P 		199
C 111.4
(-3)
P 		271.7
(0.2)
P 		412.3
(3)
P 		203.5
(-1.2)
P 		301
avr 98
(-3) 		246.8
(0.5) 		356.2
(3) 		203.8
(-0.5) 		258

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 61
(-3)
P 		118.6
(-1.3)
P 		87
(-2.2)
P 		165
(0)
P 		231.2
(1.9)
P 		268.3
(3)
P 		207
B 95.6
(-3)
P 		117.9
(-2.6)
P 		129
(-2.5)
P 		138.9
(-2.3)
P 		363.3
(1.2)
P 		476.6
(3)
P 		381
C 116.2
(-2.8)
P 		128.1
(-2.5)
P 		102.6
(-3)
P 		105
(-3)
P 		274
(0.1)
P 		432.2
(3)
P 		330
avr 90.9
(-3) 		121.5
(-2.4) 		106.2
(-2.7) 		136.3
(-2.1) 		289.5
(1) 		392.4
(3) 		302
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172679_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9222
Sequence Type Exemplar sequence
Representative Public ID F54E12.3 NCBI
Target Description F54E12.3 /REP_DB=WormBase Gene ID /WP=CE03252 /GB=CAB05210.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=histone H4
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069732(11), NM_069738(11), NM_069753(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069732 NCBI Caenorhabditis elegans HIStone family member (his-46) (his-46) mRNA, complete cds. 11/11 None
NM_069738 NCBI Caenorhabditis elegans HIStone family member (his-56) (his-56) mRNA, complete cds. 11/11 None
NM_069753 NCBI Caenorhabditis elegans HIStone family member (his-64) (his-64) mRNA, complete cds. 9/11 A 
SNAP00000002622 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11338493:11338804:1 11/11 None
GENEFINDER00000002634 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11338493:11338804:1 11/11 None
SNAP00000028587 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11407087:11407398:1 9/11 None
GENEFINDER00000028597 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11407087:11407398:1 9/11 None
SNAP00000035839 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11325989:11326300:-1 11/11 None
GENEFINDER00000035848 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11325989:11326300:-1 11/11 None
B0035.9 ENSEMBL cdna:known chromosome:CEL140:IV:11325989:11326300:-1 gene:B0035.9 11/11 None
F54E12.3 ENSEMBL cdna:known chromosome:CEL140:IV:11338493:11338804:1 gene:F54E12.3 11/11 None
F22B3.1 ENSEMBL cdna:known chromosome:CEL140:IV:11407087:11407467:1 gene:F22B3.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072799 1/11 Cross Hyb Matching Probes A 
NM_072874 2/11 Cross Hyb Matching Probes A 
NM_072890 2/11 Cross Hyb Matching Probes A 
NM_072897 1/11 Cross Hyb Matching Probes A 
NM_074633 1/11 Cross Hyb Matching Probes A 
NM_069005 4/11 Cross Hyb Matching Probes A 
NM_076830 2/11 Cross Hyb Matching Probes A 
NM_068802 2/11 Cross Hyb Matching Probes A 
SNAP00000000479 4/11 Cross Hyb Matching Probes None
GENEFINDER00000000499 4/11 Cross Hyb Matching Probes None
SNAP00000005173 2/11 Cross Hyb Matching Probes None
GENEFINDER00000005186 2/11 Cross Hyb Matching Probes None
SNAP00000015091 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015147 2/11 Cross Hyb Matching Probes None
SNAP00000018182 2/11 Cross Hyb Matching Probes None
SNAP00000018189 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018193 2/11 Cross Hyb Matching Probes None
GENEFINDER00000018202 1/11 Cross Hyb Matching Probes None
SNAP00000027917 1/11 Cross Hyb Matching Probes None
GENEFINDER00000027926 1/11 Cross Hyb Matching Probes None
SNAP00000030774 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030786 2/11 Cross Hyb Matching Probes None
SNAP00000013867 2/11 Cross Hyb Matching Probes None
GENEFINDER00000013872 2/11 Cross Hyb Matching Probes None
F55G1.11 2/11 Cross Hyb Matching Probes A 
F17E9.12 4/11 Cross Hyb Matching Probes A 
F45F2.3 2/11 Cross Hyb Matching Probes A 
F07B7.9 2/11 Cross Hyb Matching Probes A 
K06C4.2 2/11 Cross Hyb Matching Probes A 
K06C4.10 1/11 Cross Hyb Matching Probes A 
T10C6.14 1/11 Cross Hyb Matching Probes A 
K03A1.6 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13825425-13825737(+) 91.67 91.67
chrIV:11338498-11338810(+) 100.0 100.0
chrIV:11407092-11407404(+) 99.36 99.36
chrV:8537802-8538114(+) 90.06 90.06
chrI:9996503-9996815(-) 90.06 90.06
chrII:13822957-13823269(-) 91.67 91.67
chrII:13819519-13819831(-) 91.67 91.67
chrIV:11325994-11326306(-) 100.0 100.0
chrIV:7487670-7487982(-) 95.51 95.51
chrIV:8333659-8333971(-) 94.87 94.87
Public Domain and Genome References
Gene Title histone H4
histone H4
histone H4
Gene Symbol his-46
his-64
his-56
Ensembl B0035.9
F54E12.3
F22B3.1
Entrez Gene 178050 Entrez gene
178055 Entrez gene
178066 Entrez gene
SwissProt P62784 EMBL-EBI
WormBase CE03252 Wormbase
CE03252 Wormbase
CE03252 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247692_S_AT histone H4 at
HG-U133_PLUS_2:205967_AT histone 1, H4c hs
HG-U133A:205967_AT histone 1, H4c hs
HG-FOCUS:205967_AT histone 1, H4c hs
HG-U133A_2:205967_AT histone 1, H4c hs
HU35KSUBA:X60486_AT histone 1, H4c hs
HUGENEFL:X60486_AT histone 1, H4c hs
U133_X3P:G5579465_3P_AT histone 1, H4c hs
HG-U95AV2:39969_AT histone 1, H4c hs
MG-U74BV2:165373_AT histone 1, H4c mm
MOE430A:1422948_S_AT histone 1, H4c mm
MOUSE430A_2:1422948_S_AT histone 1, H4c mm
MOUSE430_2:1422948_S_AT histone 1, H4c mm
MU19KSUBB:TC34938_AT Histone 1, H4c (Hist1h4c), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05839 Hypothetical protein ZK131.8 [Caenorhabditis elegans] emb|CAB05837.1| Hypothetical protein ZK131.4 [Caenorhabditis elegans] emb|CAB05835.4| Hypothetical protein ZK131.1 [Caenorhabditis elegans] emb|CAB03396.1| Hypothetical protein T23D8.5 [Caenorhabditis elegans] emb|CAA94742.1| Hypothetical protein C50F4.7 [Caenorhabditis elegans] emb|CAA97407.1| Hypothetical protein B0035.9 [Caenorhabditis elegans] emb|CAA92734.1| Hypothetical protein F22B3.1 [Caenorhabditis elegans] emb|CAB07657.1| Hypothetical protein T10C6.14 [Caenorhabditis elegans] emb|CAB05210.1| Hypothetical protein F54E12.3 [Caenorhabditis elegans] gb|AAC05101.1| Histone protein 31 [Caenorhabditis elegans] gb|AAK84518.1| Histone protein 50 [Caenorhabditis elegans] gb|AAF98220.1| Histone protein 28 [Caenorhabditis elegans] gb|AAF98223.1| Histone protein 18 [Caenorhabditis elegans] gb|AAA83329.1| Histone protein 38 [Caenorhabditis elegans] emb|CAA24645.1| unnamed protein product [Strongylocentrotus purpuratus] emb|CAA38053.1| histone H4 [Pycnopodia helianthoides] emb|CAA38051.1| histone H4 [Pisaster ochraceus] emb|CAA38049.1| H4 histone [Pisaster brevispinus] emb|CAA33643.1| Histone protein [Caenorhabditis elegans] emb|CAA27581.1| unnamed protein product [Strongylocentrotus purpuratus] emb|CAA25241.1| unnamed protein product [Lytechinus pictus] gb|AAC48026.1| Histone protein 5 [Caenorhabditis elegans] ref|NP_509231.1| K03A1.6 [Caenorhabditis elegans] ref|NP_501406.1| HIStone family member (his-31) [Caenorhabditis elegans] ref|NP_496893.1| HIStone family member (his-10) [Caenorhabditis elegans] ref|NP_507034.1| HIStone family member (his-1) [Caenorhabditis elegans] ref|NP_492641.1| HIStone family member (his-67) [Caenorhabditis elegans] ref|NP_505466.1| HIStone family member (his-37) [Caenorhabditis elegans] ref|NP_505298.1| HIStone family member (his-18) [Caenorhabditis elegans] ref|NP_505291.1| HIStone family member (his-28) [Caenorhabditis elegans] ref|NP_505275.1| HIStone family member (his-50) [Caenorhabditis elegans] ref|NP_505200.1| HIStone family member (his-5) [Caenorhabditis elegans] ref|NP_502154.1| HIStone family member (his-64) [Caenorhabditis elegans] ref|NP_502139.1| HIStone family member (his-56) [Caenorhabditis elegans] ref|NP_502133.1| HIStone family member (his-46) [Caenorhabditis elegans] ref|NP_496896.1| HIStone family member (his-26) [Caenorhabditis elegans] ref|NP_496889.1| HIStone family member (his-14) [Caenorhabditis elegans] ref|XP_780884.1| PREDICTED: similar to histone (his-67) [Strongylocentrotus purpuratus] ref|XP_781796.1| PREDICTED: similar to histone (his-67) [Strongylocentrotus purpuratus] ref|NP_999707.1| H4 histone protein [Strongylocentrotus purpuratus] ref|NP_999716.1| late histone gene L1 H4 [Strongylocentrotus purpuratus] ref|NP_999715.1| late histone gene L2 H4 [Strongylocentrotus purpuratus] ref|NP_999713.1| late embryonic histone H4 [Strongylocentrotus purpuratus] sp|P62779|H4_PYCHE Histone H4 sp|P62778|H4_PISOC Histone H4 sp|P62777|H4_PISBR Histone H4 sp|P62780|H4_PARLI Histone H4 sp|P62782|H4_LYTPI Histone H4 sp|P62776|H4_HOLTU Histone H4 sp|P62784|H4_CAEEL Histone H4 emb|CAE60210.1| Hypothetical protein CBG03774 [Caenorhabditis briggsae] emb|CAE72198.1| Hypothetical protein CBG19306 [Caenorhabditis briggsae] emb|CAE62043.1| Hypothetical protein CBG06059 [Caenorhabditis briggsae] emb|CAE62040.1| Hypothetical protein CBG06056 [Caenorhabditis briggsae] emb|CAE61894.1| Hypothetical protein CBG05885 [Caenorhabditis briggsae] emb|CAE61864.1| Hypothetical protein CBG05842 [Caenorhabditis briggsae] emb|CAE61861.1| Hypothetical protein CBG05839 [Caenorhabditis briggsae] emb|CAE75444.1| Hypothetical protein CBG23438 [Caenorhabditis briggsae] emb|CAE58375.1| Hypothetical protein CBG01504 [Caenorhabditis briggsae] emb|CAE58373.1| Hypothetical protein CBG01500 [Caenorhabditis briggsae] gb|AAB48834.1| cleavage stage histone H4 [Psammechinus miliaris] pir||S01618 histone H4, embryonic (clones L1 and L2) - sea urchin (Strongylocentrotus purpuratus) emb|CAA86298.1| histone H4 [Holothuria tubulosa] emb|CAA29849.1| unnamed protein product [Strongylocentrotus purpuratus] emb|CAA29847.1| unnamed protein product [Strongylocentrotus purpuratus] emb|CAA76307.1| histone H4 [Paracentrotus lividus] emb|CAA25630.1| histone H4 (aa 1-103) [Psammechinus miliaris] sp|P62783|H4_STRPU Histone H4 sp|P62781|H4_PSAMI Histone H4 gb|AAA69664.1| histone gb|AAA30024.1| histone H4 gb|AAA30002.1| histone H4 prf||2209257B histone H4 7.0E-40
blast AAB00649 Histone protein 60 [Caenorhabditis elegans] ref|NP_501203.1| F55G1.11 [Caenorhabditis elegans] pir||T29230 hypothetical protein F55G1.11 - Caenorhabditis elegans 7.0E-40
blast HSUR4P histone H4, embryonic - sea urchin (Strongylocentrotus purpuratus) pir||HSUR4 histone H4 - sea urchin (Psammechinus miliaris) pir||S68537 histone H4 - starfish (Asterina pectinifera) gb|AAA30054.1| H4 histone protein 7.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR007125 EMBL-EBI Histone core 5.3E-13
Sequence
Target Sequence 
>C. ELEGANS:172679_X_AT
ggaaaaggtggtgccaagcgccatcgcaaagttctccgtgataacatccaaggtatcacc
aagccagccattcgccgtctcgccagaagaggaggagtcaagagaatctccggattgatc
tacgaggaaacccgtggagtcttgaaggtgttccttgagaacgtcatccgtgatgctgtc
acctactgcgagcacgccaagagaaagaccgtcaccgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAAGGTGGTGCCAAGCGCCATC 698 527 46 Antisense
TGCCAAGCGCCATCGCAAAGTTCTC 187 587 57 Antisense
AGTTCTCCGTGATAACATCCAAGGT 10 65 75 Antisense
ATCCAAGGTATCACCAAGCCAGCCA 376 41 91 Antisense
TCGCCGTCTCGCCAGAAGAGGAGGA 42 599 117 Antisense
GAATCTCCGGATTGATCTACGAGGA 414 329 149 Antisense
GAGGAAACCCGTGGAGTCTTGAAGG 483 403 169 Antisense
GGTGTTCCTTGAGAACGTCATCCGT 170 501 192 Antisense
GAACGTCATCCGTGATGCTGTCACC 189 347 204 Antisense
ACCTACTGCGAGCACGCCAAGAGAA 254 87 226 Antisense
GCCAAGAGAAAGACCGTCACCGCCA 219 277 241 Antisense
Sequence Source Affymetrix Proprietary Database