[Home] | [Total List]

[172678_at]

Description F13B9.7 /REP_DB=WormBase Gene ID /WP=CE04384 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19381 protein_id:AAB52631.1
Cluster 6grp_total > 73      4grp_total > 29      6grp_cgc > 76      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 77.9
(3)
P 		24.6
(-2.8)
A 		23
(-3)
A 		61.2
(1.2)
A 		55
B 64.7
(1)
A 		61
(0.6)
A 		27
(-3)
A 		84.2
(3)
P 		57
C 28.3
(-0.9)
A 		60.4
(3)
A 		41.1
(0.7)
A 		11.1
(-3)
A 		49
avr 57
(3) 		48.7
(1.1) 		30.4
(-3) 		52.2
(1.9) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 54.6
(-0.9)
A 		27.1
(-3)
A 		90.9
(1.8)
A 		29.2
(-2.8)
A 		107.1
(3)
P 		73.7
(0.5)
A 		80
B 13.3
(-3)
A 		52.4
(1.2)
A 		40.5
(-0.1)
M 		69.6
(3)
P 		57.9
(1.8)
P 		62.6
(2.3)
P 		56
C 23.1
(-3)
P 		56.5
(-0.6)
A 		64
(-0.1)
P 		107.1
(3)
P 		37.6
(-2)
A 		30.5
(-2.5)
A 		84
avr 30.3
(-3) 		45.3
(-0.7) 		65.1
(2.5) 		68.6
(3) 		67.5
(2.8) 		55.6
(1) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 28.4
(3)
P 		5.3
(-3)
A 		6
(-2.8)
A 		9
(-2)
A 		23
B 20.6
(3)
A 		15.1
(0.7)
A 		6.3
(-3)
A 		17.9
(1.9)
P 		14
C 9.4
(-0.1)
A 		17.4
(3)
A 		14.3
(1.8)
A 		1.9
(-3)
A 		16
avr 19.5
(3) 		12.6
(-0.9) 		8.9
(-3) 		9.6
(-2.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.1
(-2.3)
A 		9.6
(-2.5)
A 		19.8
(-0)
A 		7.4
(-3)
A 		32.3
(3)
P 		18
(-0.4)
A 		25
B 4.6
(-3)
A 		17.4
(1.1)
A 		9.8
(-1.3)
M 		18.4
(1.4)
P 		23.5
(3)
P 		23.4
(3)
P 		19
C 8.6
(-3)
P 		17.2
(1)
A 		16.3
(0.6)
P 		21.5
(3)
P 		12.2
(-1.3)
A 		10.2
(-2.3)
A 		13
avr 7.8
(-3) 		14.7
(-0.2) 		15.3
(0) 		15.8
(0.2) 		22.7
(3) 		17.2
(0.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17253
Sequence Type Exemplar sequence
Representative Public ID F13B9.7 NCBI
Target Description F13B9.7 /REP_DB=WormBase Gene ID /WP=CE04384 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19381 protein_id:AAB52631.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F13B9.7
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F13B9.7 F13B9.7 /REP_DB=WormBase Gene ID /WP=CE04384 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q19381 protein_id:AAB52631.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076995 11/11 Negative Strand Matching Probes A 
SNAP00000009668 11/11 Negative Strand Matching Probes None
GENEFINDER00000009678 11/11 Negative Strand Matching Probes None
F13B9.5.2 11/11 Negative Strand Matching Probes None
F13B9.5.1 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8280345-8280523(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172678_AT
ctccatcggctcttttattaaacttatcaaccgcttcttgactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCATCGGCTCTTTTATTAAACTT 502 233 33 Antisense
TCCATCGGCTCTTTTATTAAACTTA 219 591 34 Antisense
CCATCGGCTCTTTTATTAAACTTAT 337 267 35 Antisense
CATCGGCTCTTTTATTAAACTTATC 198 213 36 Antisense
TCGGCTCTTTTATTAAACTTATCAA 498 605 38 Antisense
TTATTAAACTTATCAACCGCTTCTT 170 631 47 Antisense
TATTAAACTTATCAACCGCTTCTTG 29 659 48 Antisense
ATTAAACTTATCAACCGCTTCTTGA 451 11 49 Antisense
TTAAACTTATCAACCGCTTCTTGAC 278 683 50 Antisense
TAAACTTATCAACCGCTTCTTGACT 92 641 51 Antisense
AAACTTATCAACCGCTTCTTGACTC 378 127 52 Antisense
Sequence Source Affymetrix Proprietary Database