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[172677_x_at]

Description M03A1.5 /REP_DB=WormBase Gene ID /WP=CE07392 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q21474 protein_id:AAA93432.1
Cluster 6grp_total > 21      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 63.8
(-0.5)
P 		38.2
(-1.9)
A 		17.7
(-3)
A 		129.5
(3)
P 		112
B 84.4
(3)
P 		21.2
(-2.2)
A 		10.8
(-3)
A 		81.4
(2.8)
P 		74
C 53.1
(-1.2)
P 		5.5
(-3)
A 		16.9
(-2.6)
A 		161.7
(3)
P 		156
avr 67.1
(-0.1) 		21.6
(-2.6) 		15.1
(-3) 		124.2
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		3.2
(-2.7)
A 		43
(3)
A 		3.1
(-2.7)
A 		0.9
(-3)
A 		1.5
(-2.9)
A 		42
B 40.4
(3)
A 		39.1
(2.8)
A 		35.2
(2.2)
A 		5.4
(-2.6)
A 		23.6
(0.3)
A 		2.6
(-3)
A 		38
C 14
(-1.8)
A 		64.6
(3)
M 		2.5
(-2.9)
A 		28.5
(-0.4)
A 		1.1
(-3)
A 		2
(-2.9)
A 		64
avr 18.7
(-0) 		35.6
(3) 		26.9
(1.4) 		12.3
(-1.2) 		8.5
(-1.8) 		2
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 23.2
(3)
P 		8.3
(-1.8)
A 		4.6
(-3)
A 		19
(1.6)
P 		19
B 26.9
(3)
P 		5.2
(-2.3)
A 		2.5
(-3)
A 		17.4
(0.7)
P 		24
C 17.6
(0.7)
P 		1.6
(-3)
A 		5.9
(-2)
A 		27.3
(3)
P 		26
avr 22.6
(3) 		5
(-2.8) 		4.3
(-3) 		21.2
(2.5) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.1
(-2.5)
A 		9.4
(3)
A 		0.8
(-2.7)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		9
B 14.1
(3)
A 		13
(2.5)
A 		8.5
(0.4)
A 		1.4
(-2.8)
A 		9.6
(0.9)
A 		1
(-3)
A 		13
C 5.2
(-1.5)
A 		19.7
(3)
M 		0.6
(-2.9)
A 		5.7
(-1.4)
A 		0.4
(-3)
A 		0.7
(-2.9)
A 		19
avr 6.5
(0.3) 		11.3
(3) 		6.2
(0.1) 		2.6
(-1.9) 		3.4
(-1.5) 		0.7
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172677_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5123
Sequence Type Exemplar sequence
Representative Public ID M03A1.5 NCBI
Target Description M03A1.5 /REP_DB=WormBase Gene ID /WP=CE07392 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q21474 protein_id:AAA93432.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) M03A1.5
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M03A1.5 M03A1.5 /REP_DB=WormBase Gene ID /WP=CE07392 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q21474 protein_id:AAA93432.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078276 1/11 Cross Hyb Matching Probes A 
NM_062430 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000003374 2/11 Cross Hyb Matching Probes None
GENEFINDER00000005214 1/11 Cross Hyb Matching Probes None
GENEFINDER00000017471 1/11 Cross Hyb Matching Probes None
SNAP00000029285 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029298 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031976 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019201 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026632 2/11 Cross Hyb Matching Probes None
GENEFINDER00000027324 2/11 Cross Hyb Matching Probes None
GENEFINDER00000033793 2/11 Cross Hyb Matching Probes None
GENEFINDER00000037541 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000541 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025097 3/11 Cross Hyb Matching Probes None
T05A7.9 1/11 Cross Hyb Matching Probes R A 
T25D1.3 1/11 Cross Hyb Matching Probes A 
NM_077120 10/11 Negative Strand Matching Probes A 
C24A3.1 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172677_X_AT
gaagggtctcaccacgaattttctcgaattttccagaaggttctggaacattccagaatt
ttctcaaattttccagaaggttctggaacattccagaattttctcaaattttccagaagg
ttctggaacattccagcattttctcaaattttccagaaggttctggaacattccagaatt
ttctcaaattttccagaaggttctggaacattccagaattttctcggattttccagaagg
ttctggaacattccagaattttctcaaattttccagaaggttctggaacattccagaatt
ttctcggattttccagaaggttctggaacattccagcattttctcaaattttccagaagg
ttctggaacattccagaattttctcaaattttccagaaggttctggaacattccagaatt
ttctcggattttccagaaggttctggaacattccagaattttctcaaattttccagaagg
ttctggaacattccagaattttctcggattttccagaaggttctggaacattccagaatt
ttctcgaattttccagaaggttctggagcattccggaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGGTCTCACCACGAATTTTCTC 586 333 57 Antisense
CCACGAATTTTCTCGAATTTTCCAG 300 269 68 Antisense
GAACATTCCAGCATTTTCTCAAATT 452 351 182 Antisense
CCAGAATTTTCTCGGATTTTCCAGA 65 265 269 Antisense
GAACATTCCAGAATTTTCTCGGATT 451 351 342 Antisense
GGAACATTCCAGCATTTTCTCAAAT 644 119 381 Antisense
GGAACATTCCAGAATTTTCTCAAAT 552 529 421 Antisense
TCCAGAATTTTCTCGGATTTTCCAG 149 591 468 Antisense
GGAACATTCCAGAATTTTCTCGGAT 554 529 541 Antisense
GGAACATTCCAGAATTTTCTCGAAT 553 529 581 Antisense
GAAGGTTCTGGAGCATTCCGGAATT 577 331 612 Antisense
Sequence Source Affymetrix Proprietary Database