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[172676_x_at]

Description M03A1.4 /REP_DB=WormBase Gene ID /WP=CE07391 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q21475 protein_id:AAA93433.1
Cluster 6grp_total > 02      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 70.2
(-1.8)
A 		24.5
(-2.6)
A 		2.8
(-3)
A 		345.5
(3)
P 		343
B 85.8
(3)
A 		37.8
(-1.4)
A 		20.2
(-3)
A 		77.6
(2.3)
P 		66
C 54.8
(-2.4)
A 		40.6
(-2.6)
A 		12.9
(-3)
A 		429.1
(3)
P 		416
avr 70.3
(-1.7) 		34.3
(-2.5) 		12
(-3) 		284.1
(3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 64.1
(3)
A 		42.2
(0.4)
A 		13.8
(-2.9)
A 		13
(-3)
A 		43.2
(0.5)
A 		34.1
(-0.5)
A 		51
B 6.1
(-2.4)
A 		29.4
(1.6)
A 		6.5
(-2.4)
A 		37.2
(3)
A 		4.1
(-2.8)
A 		2.8
(-3)
A 		34
C 19.3
(-2.3)
A 		121.7
(3)
A 		43.9
(-1)
A 		15.8
(-2.4)
A 		5.2
(-3)
A 		4.7
(-3)
A 		117
avr 29.8
(-1.1) 		64.4
(3) 		21.4
(-2.1) 		22
(-2) 		17.5
(-2.6) 		13.9
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 25.6
(-0)
A 		5.3
(-2.4)
A 		0.7
(-3)
A 		50.6
(3)
P 		50
B 27.3
(3)
A 		9.3
(-1.8)
A 		4.7
(-3)
A 		16.5
(0.1)
P 		23
C 18.1
(-1.8)
A 		11.7
(-2.4)
A 		4.5
(-3)
A 		72.3
(3)
P 		68
avr 23.7
(-0.2) 		8.8
(-2.2) 		3.3
(-3) 		46.5
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 11.8
(1.4)
A 		15
(3)
A 		3
(-3)
A 		3.3
(-2.9)
A 		13
(2)
A 		8.3
(-0.4)
A 		12
B 2.1
(-2.3)
A 		9.8
(3)
A 		1.6
(-2.7)
A 		9.8
(3)
A 		1.7
(-2.6)
A 		1.1
(-3)
A 		9
C 7.2
(-2.1)
A 		37.1
(3)
A 		11.2
(-1.4)
A 		3.2
(-2.7)
A 		1.7
(-3)
A 		1.6
(-3)
A 		36
avr 7
(-1.8) 		20.6
(3) 		5.3
(-2.4) 		5.4
(-2.4) 		5.5
(-2.4) 		3.7
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172676_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5314
Sequence Type Exemplar sequence
Representative Public ID M03A1.4 NCBI
Target Description M03A1.4 /REP_DB=WormBase Gene ID /WP=CE07391 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q21475 protein_id:AAA93433.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) M03A1.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M03A1.4 M03A1.4 /REP_DB=WormBase Gene ID /WP=CE07391 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q21475 protein_id:AAA93433.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 1/11 Cross Hyb Matching Probes A 
NM_077120 8/11 Cross Hyb Matching Probes A 
NM_061393 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042962 8/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 1/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 2/11 Cross Hyb Matching Probes None
SNAP00000029283 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 1/11 Cross Hyb Matching Probes None
T02H6.3 1/11 Cross Hyb Matching Probes A 
Y116A8C.41 1/11 Cross Hyb Matching Probes A 
C24A3.1 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172676_X_AT
cagaaccttctggaaaatttgagaaaattctggaatgttccagaaccttctggaaaattc
gagaaaattcgtggtgagacccttcgtggtgagacccttcgtggtgagacccatcttggc
gagacccataagttttggcgggaaattcaaattttctgtgaaaaattgtggcgggaattc
aaaatttctgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAACCTTCTGGAAAATTTGAGAA 647 203 19 Antisense
TCTGGAATGTTCCAGAACCTTCTGG 43 607 47 Antisense
CAGAACCTTCTGGAAAATTCGAGAA 650 203 59 Antisense
GAAAATTCGTGGTGAGACCCTTCGT 489 347 81 Antisense
AAATTCGTGGTGAGACCCTTCGTGG 29 115 83 Antisense
TGGTGAGACCCTTCGTGGTGAGACC 542 551 105 Antisense
ACCCATCTTGGCGAGACCCATAAGT 145 89 127 Antisense
GCGAGACCCATAAGTTTTGGCGGGA 302 287 137 Antisense
GGCGGGAAATTCAAATTTTCTGTGA 217 541 155 Antisense
TTTCTGTGAAAAATTGTGGCGGGAA 51 671 171 Antisense
GTGGCGGGAATTCAAAATTTCTGTG 636 491 186 Antisense
Sequence Source Affymetrix Proprietary Database