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[172675_x_at]

Description C01B10.5 /REP_DB=WormBase Gene ID /WP=CE06736 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q17536 protein_id:AAC47916.1
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 01      6grp_total > 27      4grp_total > 43      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 975
1 2 3 4 range
A 941
(-2.8)
P 		1800.9
(3)
P 		925.4
(-2.9)
P 		908.5
(-3)
P 		892
B 985.7
(-1.5)
P 		1446.3
(3)
P 		826.4
(-3)
P 		1052.7
(-0.8)
P 		620
C 1003.2
(-0.7)
P 		1266.6
(3)
P 		843.8
(-3)
P 		981.7
(-1)
P 		423
avr 976.6
(-2) 		1504.6
(3) 		865.2
(-3) 		981
(-1.9) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3754
1 2 3 4 5 6 range
A 4077.6
(3)
P 		2581.6
(0.4)
P 		920.7
(-2.4)
P 		873.4
(-2.5)
P 		582.8
(-3)
P 		2586.9
(0.4)
P 		3495
B 3994.1
(3)
P 		2239.9
(-0.2)
P 		1002.1
(-2.5)
P 		823.8
(-2.9)
P 		746
(-3)
P 		1436.8
(-1.7)
P 		3248
C 4337
(3)
P 		2402.3
(-0.3)
P 		1126.2
(-2.5)
P 		844.8
(-3)
P 		946.1
(-2.8)
P 		1724.4
(-1.5)
P 		3492
avr 4136.2
(3) 		2407.9
(-0.1) 		1016.3
(-2.5) 		847.3
(-2.8) 		758.3
(-3) 		1916
(-0.9) 		3378
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 342.6
(1.9)
P 		390.9
(3)
P 		241.9
(-0.5)
P 		133
(-3)
P 		258
B 314.3
(1.4)
P 		357.2
(3)
P 		191.5
(-3)
P 		224.3
(-1.8)
P 		166
C 332.1
(2)
P 		364.2
(3)
P 		294.1
(0.9)
P 		165.5
(-3)
P 		199
avr 329.7
(1.7) 		370.8
(3) 		242.5
(-0.9) 		174.3
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1438
1 2 3 4 5 6 range
A 751.7
(1.7)
P 		918.1
(3)
P 		200.5
(-2.8)
P 		221.5
(-2.6)
P 		175.9
(-3)
P 		629.8
(0.7)
P 		742
B 1389.7
(3)
P 		745.6
(-0.3)
P 		243.3
(-2.9)
P 		218.2
(-3)
P 		303.1
(-2.6)
P 		535.8
(-1.4)
P 		1172
C 1607.5
(3)
P 		733
(-0.6)
P 		286.6
(-2.5)
P 		169.9
(-3)
P 		306.1
(-2.4)
P 		577.3
(-1.3)
P 		1438
avr 1249.6
(3) 		798.9
(0.4) 		243.5
(-2.8) 		203.2
(-3) 		261.7
(-2.7) 		581
(-0.8) 		1046
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172675_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10497
Sequence Type Exemplar sequence
Representative Public ID C01B10.5 NCBI
Target Description C01B10.5 /REP_DB=WormBase Gene ID /WP=CE06736 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:Q17536 protein_id:AAC47916.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026111(10), NM_001026112(9), NM_068626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026111 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-7) (hil-7) mRNA, complete cds. 10/11 None
NM_001026112 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-7) (hil-7) mRNA, complete cds. 9/11 None
NM_068626 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-7) (hil-7) mRNA, complete cds. 11/11 A 
SNAP00000026863 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6646398:6646725:1 11/11 None
GENEFINDER00000026870 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6646398:6646814:1 9/11 None
C01B10.5b.2 ENSEMBL cdna:known chromosome:CEL140:IV:6646296:6646875:1 gene:C01B10.5 10/11 A 
C01B10.5b.1 ENSEMBL cdna:known chromosome:CEL140:IV:6646296:6646920:1 gene:C01B10.5 10/11 A 
C01B10.5c ENSEMBL cdna:known chromosome:CEL140:IV:6646296:6646917:1 gene:C01B10.5 9/11 A 
C01B10.5a ENSEMBL cdna:known chromosome:CEL140:IV:6646331:6646923:1 gene:C01B10.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076974 1/11 Cross Hyb Matching Probes A B 
NM_001026113 5/11 Cross Hyb Matching Probes None
SNAP00000034834 1/11 Cross Hyb Matching Probes None
C01B10.5e 5/11 Cross Hyb Matching Probes None
F22F1.1 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177433 4 3 NM_001026111 171921_x_at (11), 172045_x_at (11), 172675_x_at (10)
NM_001026112 171921_x_at (11), 172045_x_at (11), 172675_x_at (9)
NM_068626 171921_x_at (11), 172045_x_at (11), 172675_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6646403-6646731(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01B10.5
Sequence
Target Sequence 
>C. ELEGANS:172675_X_AT
atggccgccgtccaaaaagccaagaaagtcgctaagaccaagaaggttgctgccaagcca
aaggctccaaaggtcaagaagattcaggcctcaccaaagaaggctgctgctccaaaggcc
aagaagccagtgaagaaggccgccgccaagaaatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCGCCGTCCAAAAAGCCAAGA 525 53 13 Antisense
AAGCCAAGAAAGTCGCTAAGACCAA 201 147 29 Antisense
AGACCAAGAAGGTTGCTGCCAAGCC 148 71 47 Antisense
AGGTTGCTGCCAAGCCAAAGGCTCC 501 57 56 Antisense
AAGCCAAAGGCTCCAAAGGTCAAGA 93 145 67 Antisense
GGTCAAGAAGATTCAGGCCTCACCA 10 505 84 Antisense
GAAGATTCAGGCCTCACCAAAGAAG 631 337 90 Antisense
CTCACCAAAGAAGGCTGCTGCTCCA 6 229 102 Antisense
GCTGCTGCTCCAAAGGCCAAGAAGC 300 297 115 Antisense
GAAGCCAGTGAAGAAGGCCGCCGCC 375 345 135 Antisense
AAGAAGGCCGCCGCCAAGAAATCTC 581 151 145 Antisense
Sequence Source Affymetrix Proprietary Database