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[172674_x_at]

Description F48A11.6 /REP_DB=WormBase Gene ID /WP=CE17074 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O17371 protein_id:AAB71288.1
Cluster 6grp_total > 19      4grp_total > 53      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 134.2
(1.6)
A 		112.5
(-3)
A 		114
(-2.7)
A 		140.8
(3)
A 		28
B 123.4
(0.8)
M 		156.8
(3)
A 		116.4
(0.3)
M 		66.3
(-3)
A 		91
C 131.5
(3)
P 		101.2
(-3)
A 		119.8
(0.7)
A 		118.7
(0.5)
A 		30
avr 129.7
(3) 		123.5
(1.2) 		116.7
(-0.7) 		108.6
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 157.7
(2.2)
P 		97.7
(-2.4)
A 		124
(-0.4)
P 		90.4
(-3)
A 		167.5
(3)
A 		103.2
(-2)
A 		77
B 147.1
(3)
P 		138
(1.9)
A 		118.1
(-0.6)
P 		98.6
(-3)
P 		126.4
(0.4)
P 		107.2
(-1.9)
A 		49
C 130.6
(0.7)
P 		104.8
(-2.5)
A 		117.2
(-1)
A 		149.8
(3)
P 		149.8
(3)
P 		100.7
(-3)
M 		49
avr 145.1
(2.6) 		113.5
(-1.7) 		119.8
(-0.8) 		112.9
(-1.8) 		147.9
(3) 		103.7
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 48.9
(3)
A 		24.4
(-2.2)
A 		29.8
(-1)
A 		20.6
(-3)
A 		28
B 39.4
(3)
M 		38.7
(2.8)
A 		27
(0.1)
M 		14.1
(-3)
A 		25
C 43.5
(3)
P 		29.1
(-0.7)
A 		41.8
(2.6)
A 		20
(-3)
A 		24
avr 43.9
(3) 		30.7
(-0.1) 		32.9
(0.4) 		18.2
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 29.1
(-1.7)
P 		34.8
(-0.4)
A 		27
(-2.1)
P 		22.9
(-3)
A 		50.5
(3)
A 		25.1
(-2.5)
A 		28
B 51.2
(3)
P 		45.9
(1.7)
A 		28.7
(-2.4)
P 		26.1
(-3)
P 		51.3
(3)
P 		40
(0.3)
A 		25
C 48.4
(3)
P 		32
(-2.3)
A 		29.8
(-3)
A 		30.1
(-2.9)
P 		48.5
(3)
P 		33.7
(-1.7)
M 		19
avr 42.9
(1.2) 		37.6
(-0.2) 		28.5
(-2.5) 		26.4
(-3) 		50.1
(3) 		32.9
(-1.4) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172674_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4639
Sequence Type Exemplar sequence
Representative Public ID F48A11.6 NCBI
Target Description F48A11.6 /REP_DB=WormBase Gene ID /WP=CE17074 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O17371 protein_id:AAB71288.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F48A11.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F48A11.6 F48A11.6 /REP_DB=WormBase Gene ID /WP=CE17074 /CHR=2 /FEA=Sanger Annotation /DEF=(ST.LOUIS) TR:O17371 protein_id:AAB71288.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061284 5/11 Cross Hyb Matching Probes None
GENEFINDER00000010701 5/11 Cross Hyb Matching Probes None
Y43H11AL.1.1 5/11 Cross Hyb Matching Probes None
Y43H11AL.1.3 5/11 Cross Hyb Matching Probes None
Y43H11AL.1.2 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172674_X_AT
ttgcccaaaacttcgaattttccagaaaatgtcccatcaaatggttccatttcgaatgtg
ttggactattggctgctccacttgacgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCCAAAACTTCGAATTTTCCAG 252 695 254 Antisense
TGCCCAAAACTTCGAATTTTCCAGA 212 585 255 Antisense
GAATTTTCCAGAAAATGTCCCATCA 286 325 268 Antisense
TTTCCAGAAAATGTCCCATCAAATG 45 669 272 Antisense
GAAAATGTCCCATCAAATGGTTCCA 64 355 278 Antisense
ATGTCCCATCAAATGGTTCCATTTC 307 49 282 Antisense
AATGGTTCCATTTCGAATGTGTTGG 426 163 293 Antisense
GAATGTGTTGGACTATTGGCTGCTC 684 331 307 Antisense
TGTGTTGGACTATTGGCTGCTCCAC 583 555 310 Antisense
TGTTGGACTATTGGCTGCTCCACTT 566 563 312 Antisense
TATTGGCTGCTCCACTTGACGAATG 206 665 320 Antisense
Sequence Source Affymetrix Proprietary Database