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[172672_x_at]

Description Y73B6BL.L_rc /REP_DB=WormBase Gene ID /WP=CE26285 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAG23471.1
Cluster 6grp_total > 11      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 760
1 2 3 4 range
A 102.2
(-1.6)
A 		30.7
(-3)
A 		68
(-2.3)
A 		338.1
(3)
P 		307
B 121.7
(1.2)
A 		39.9
(-3)
A 		98
(-0)
A 		156.7
(3)
A 		117
C 134
(-2.4)
A 		108.7
(-2.6)
A 		64.8
(-3)
A 		790.2
(3)
P 		725
avr 119.3
(-2) 		59.8
(-3) 		76.9
(-2.7) 		428.3
(3) 		369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 57.1
(1)
A 		32.3
(-1.2)
A 		79.3
(3)
A 		43.9
(-0.1)
A 		62
(1.5)
A 		11.5
(-3)
A 		68
B 70.7
(1.2)
A 		93.4
(3)
A 		58.5
(0.2)
A 		43.2
(-1)
A 		54.7
(-0.1)
A 		17.9
(-3)
A 		76
C 30.3
(-3)
A 		206.2
(3)
A 		52.8
(-2.2)
A 		43.1
(-2.5)
A 		64.6
(-1.8)
A 		29
(-3)
A 		177
avr 52.7
(-0.8) 		110.6
(3) 		63.5
(-0.1) 		43.4
(-1.4) 		60.4
(-0.3) 		19.5
(-3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 37.2
(1.3)
A 		6.7
(-3)
A 		17.8
(-1.4)
A 		49.5
(3)
P 		43
B 38.8
(3)
A 		9.9
(-3)
A 		22.7
(-0.3)
A 		33.4
(1.9)
A 		29
C 44.4
(-1.8)
A 		31.2
(-2.5)
A 		22.6
(-3)
A 		133.2
(3)
P 		111
avr 40.1
(-0.4) 		15.9
(-3) 		21
(-2.5) 		72
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 10.5
(-0.1)
A 		11.5
(0.3)
A 		17.3
(2.5)
A 		11.1
(0.1)
A 		18.7
(3)
A 		2.8
(-3)
A 		16
B 24.6
(1.4)
A 		31.1
(3)
A 		14.2
(-1.2)
A 		11.4
(-1.8)
A 		22.2
(0.8)
A 		6.7
(-3)
A 		24
C 11.2
(-2.7)
A 		62.9
(3)
A 		13.4
(-2.5)
A 		8.7
(-3)
A 		20.9
(-1.6)
A 		9.7
(-2.9)
A 		54
avr 15.4
(-1.1) 		35.2
(3) 		15
(-1.2) 		10.4
(-2.2) 		20.6
(-0) 		6.4
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172672_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28192
Sequence Type Exemplar sequence
Representative Public ID Y73B6BL.L NCBI
Target Description Y73B6BL.L_rc /REP_DB=WormBase Gene ID /WP=CE26285 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAG23471.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y73B6BL.L
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y73B6BL.L Y73B6BL.L_rc /REP_DB=WormBase Gene ID /WP=CE26285 /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=(ST.LOUIS) protein_id:AAG23471.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013325 1/11 Cross Hyb Matching Probes None
GENEFINDER00000044502 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026635 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025096 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14184823-14190066(-) 44.27 47.58
Sequence
Target Sequence 
>C. ELEGANS:172672_X_AT
cgctccgctatgttaaactcgctgtgggcgtggcgagctgtctccgcccgctgcgagtta
aacgtagcggcgcgcggaacccgtaggatgtcggcggcctgatattggttggtccccaaa
tttttgccttttctccgtgagtggacgagaaaaaggcggggcctgtgcggcattcggaat
ttttcggcataacggcatatgccgccaaaaaattttttcggcatatcggcatatgccgat
atgccgtccatttttcttttcggcataaccgcattttcggcatatgccgtgaattttgaa
atcggcatttcggcatatgccgcgctccaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTCCGCTATGTTAAACTCGCTGT 493 255 41 Antisense
AACTCGCTGTGGGCGTGGCGAGCTG 617 139 56 Antisense
TCCGCCCGCTGCGAGTTAAACGTAG 673 595 83 Antisense
CGCGCGGAACCCGTAGGATGTCGGC 625 241 111 Antisense
GCCTGATATTGGTTGGTCCCCAAAT 624 281 137 Antisense
TTGCCTTTTCTCCGTGAGTGGACGA 540 701 164 Antisense
AAAAAGGCGGGGCCTGTGCGGCATT 459 127 190 Antisense
GTGCGGCATTCGGAATTTTTCGGCA 573 475 205 Antisense
ATATGCCGTCCATTTTTCTTTTCGG 156 21 279 Antisense
TTCGGCATAACCGCATTTTCGGCAT 419 695 299 Antisense
TTCGGCATATGCCGCGCTCCAAAAA 290 695 349 Antisense
Sequence Source Affymetrix Proprietary Database