[Home] | [Total List]

[172669_x_at] major sperm protein

Description K07F5.9 /REP_DB=WormBase Gene ID /WP=CE06124 /GEN=ssp-10 /TR=Q21289 /GB=CAA94274.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 33      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 76.8
(-3)
A 		92.3
(-2.1)
A 		158.4
(1.8)
A 		178.7
(3)
A 		102
B 92.1
(-1.6)
A 		153.6
(3)
A 		125
(0.9)
A 		73
(-3)
A 		81
C 108.1
(-3)
A 		176.1
(3)
A 		112.9
(-2.6)
A 		172.2
(2.7)
A 		68
avr 92.3
(-3) 		140.7
(2.9) 		132.1
(1.9) 		141.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 992
1 2 3 4 5 6 range
A 104.4
(-2.9)
A 		94.2
(-3)
A 		102.4
(-2.9)
A 		171.7
(-2.5)
P 		765.8
(1.3)
P 		1031.2
(3)
P 		937
B 104.1
(-2.6)
A 		107.8
(-2.6)
A 		39.6
(-3)
A 		149.3
(-2.3)
P 		883.8
(2.5)
P 		962
(3)
P 		922
C 99.1
(-3)
A 		108.6
(-2.9)
A 		111.1
(-2.9)
A 		98.9
(-3)
M 		885.8
(2.4)
P 		981
(3)
P 		882
avr 102.5
(-2.9) 		103.5
(-2.9) 		84.4
(-3) 		140
(-2.6) 		845.1
(2) 		991.4
(3) 		907
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 28
(-0.8)
A 		20
(-3)
A 		41.4
(3)
A 		26.2
(-1.3)
A 		21
B 29.4
(0.7)
A 		37.9
(3)
A 		29
(0.6)
A 		15.6
(-3)
A 		22
C 35.8
(-1.1)
A 		50.6
(3)
A 		39.3
(-0.1)
A 		29
(-3)
A 		22
avr 31.1
(0.5) 		36.2
(2.8) 		36.6
(3) 		23.6
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 19.2
(-3)
A 		33.5
(-2.6)
A 		22.3
(-2.9)
A 		43.6
(-2.4)
P 		231.1
(2.5)
P 		251.1
(3)
P 		232
B 36.2
(-2.5)
A 		35.9
(-2.5)
A 		9.6
(-3)
A 		39.5
(-2.5)
P 		359.1
(3)
P 		358.7
(3)
P 		350
C 36.7
(-2.7)
A 		33.1
(-2.7)
A 		28.3
(-2.8)
A 		19.9
(-3)
M 		286.6
(2.2)
P 		328.4
(3)
P 		309
avr 30.7
(-2.8) 		34.2
(-2.7) 		20.1
(-3) 		34.3
(-2.7) 		292.3
(2.6) 		312.7
(3) 		293
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172669_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9489
Sequence Type Exemplar sequence
Representative Public ID K07F5.9 NCBI
Target Description K07F5.9 /REP_DB=WormBase Gene ID /WP=CE06124 /GEN=ssp-10 /TR=Q21289 /GB=CAA94274.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069366 NCBI Caenorhabditis elegans Sperm-Specific family, class P family member (ssp-10) (ssp-10) mRNA, complete cds. 11/11 None
SNAP00000004252 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9850675:9851004:-1 11/11 None
GENEFINDER00000004269 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9850675:9851004:-1 11/11 None
K07F5.9 ENSEMBL cdna:known chromosome:CEL140:IV:9850675:9851004:-1 gene:K07F5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060784 1/11 Cross Hyb Matching Probes A 
NM_073863 4/11 Cross Hyb Matching Probes A 
SNAP00000003940 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003950 1/11 Cross Hyb Matching Probes None
SNAP00000022855 4/11 Cross Hyb Matching Probes None
W02D9.5 1/11 Cross Hyb Matching Probes A 
F42E8.2 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9850680-9851010(-) 100.0 100.0
Public Domain and Genome References
Gene Title major sperm protein
Gene Symbol ssp-10
Ensembl K07F5.9
Entrez Gene 177834 Entrez gene
WormBase CE06124 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94274 Hypothetical protein K07F5.9 [Caenorhabditis elegans] ref|NP_501767.1| Sperm-Specific family, class P family member (ssp-10) [Caenorhabditis elegans] 2.0E-42
blast AAB04599 Sperm-specific family, class p protein 11 [Caenorhabditis elegans] ref|NP_500699.1| Sperm-Specific family, class P family member (ssp-11) [Caenorhabditis elegans] ref|NP_500697.1| Sperm-Specific family, class P family member (ssp-9) [Caenorhabditis elegans] gb|AAC47985.1| Sperm-specific family, class p protein 9 [Caenorhabditis elegans] 3.0E-42
blast AAB42295 Sperm-specific family, class p protein 16 [Caenorhabditis elegans] ref|NP_491762.1| Sperm-Specific family, class P family member (ssp-16) [Caenorhabditis elegans] 2.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 4.1E-35
Sequence
Target Sequence 
>C. ELEGANS:172669_X_AT
gtaccgtaccagccgctggaggatcctcgactcacaagctcgtcaatggtggagctgaga
agatcatcttcaagatcaagtcatccaacaataacgaataccgcattgctccagttttcg
gatttgtcgatccatccggatcaaaggatgttgtgatcacccgcactgctggtgctccaa
aagaggataagcttgtcattcattttgcaccagctccagccgatgctactgatgctcaag
ccgcttttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCGTACCAGCCGCTGGAGGATC 134 457 41 Antisense
GCTGGAGGATCCTCGACTCACAAGC 383 295 55 Antisense
GACTCACAAGCTCGTCAATGGTGGA 25 375 69 Antisense
AAGATCAAGTCATCCAACAATAACG 268 155 112 Antisense
CGAATACCGCATTGCTCCAGTTTTC 152 253 135 Antisense
GGATTTGTCGATCCATCCGGATCAA 500 509 160 Antisense
AAAGGATGTTGTGATCACCCGCACT 60 121 183 Antisense
GCACTGCTGGTGCTCCAAAAGAGGA 445 315 203 Antisense
AAGCTTGTCATTCATTTTGCACCAG 624 147 229 Antisense
TCCAGCCGATGCTACTGATGCTCAA 403 589 255 Antisense
TACTGATGCTCAAGCCGCTTTTGCT 189 647 267 Antisense
Sequence Source Affymetrix Proprietary Database