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[172667_x_at]

Description W01B11.4B /REP_DB=WormBase Gene ID /WP=CE18308 /TR=O45013 /GB=AAK21476.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 32      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 48.2
(-3)
A 		169
(3)
A 		82.5
(-1.3)
A 		94.9
(-0.7)
A 		121
B 39.3
(-1.5)
A 		26.2
(-3)
A 		79.3
(3)
A 		75.6
(2.6)
A 		53
C 66
(-1.1)
A 		33.8
(-3)
A 		134
(3)
P 		119.3
(2.1)
P 		100
avr 51.2
(-3) 		76.3
(0.2) 		98.6
(3) 		96.6
(2.7) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 76.7
(-1.6)
A 		107.3
(1.4)
A 		92.3
(-0.1)
A 		105.3
(1.2)
P 		123.2
(3)
P 		62.7
(-3)
M 		61
B 66.2
(-1.3)
P 		85.9
(1.1)
A 		52.7
(-3)
A 		101.4
(3)
A 		75
(-0.3)
P 		57.9
(-2.4)
M 		49
C 44.1
(-3)
A 		98
(0.5)
M 		90.1
(0)
A 		135.5
(3)
A 		86
(-0.2)
A 		77.7
(-0.8)
A 		91
avr 62.3
(-3) 		97.1
(1) 		78.4
(-1.1) 		114.1
(3) 		94.7
(0.8) 		66.1
(-2.6) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 17.6
(-2)
A 		36.7
(3)
A 		21.6
(-1)
A 		13.9
(-3)
A 		23
B 12.5
(0)
A 		6.5
(-3)
A 		18.4
(3)
A 		16.1
(1.8)
A 		12
C 21.8
(-1)
A 		9.7
(-3)
A 		46.7
(3)
P 		20.1
(-1.3)
P 		37
avr 17.3
(-2.7) 		17.6
(-2.6) 		28.9
(3) 		16.7
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 14.1
(-3)
A 		38.2
(3)
A 		20.1
(-1.5)
A 		26.7
(0.1)
P 		37.2
(2.8)
P 		15.3
(-2.7)
M 		24
B 23
(0.5)
P 		28.6
(2.4)
A 		12.8
(-3)
A 		26.9
(1.8)
A 		30.5
(3)
P 		21.6
(-0)
M 		18
C 16.4
(-3)
A 		29.9
(3)
M 		22.9
(-0.1)
A 		27.2
(1.8)
A 		27.8
(2.1)
A 		26
(1.3)
A 		14
avr 17.8
(-3) 		32.2
(3) 		18.6
(-2.7) 		26.9
(0.8) 		31.8
(2.8) 		21
(-1.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172667_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.108
Sequence Type Exemplar sequence
Representative Public ID W01B11.4B NCBI
Target Description W01B11.4B /REP_DB=WormBase Gene ID /WP=CE18308 /TR=O45013 /GB=AAK21476.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058736
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W01B11.4b ENSEMBL cdna:known chromosome:CEL140:I:3269656:3269868:-1 gene:W01B11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058736 5/11 Cross Hyb Matching Probes None
SNAP00000027449 5/11 Cross Hyb Matching Probes None
GENEFINDER00000027456 5/11 Cross Hyb Matching Probes None
W01B11.4a 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3269655-3269868(-) 100.0 100.0
Public Domain and Genome References
Ensembl W01B11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32942 hypothetical protein W01B11.4b - Caenorhabditis elegans 2.0E-33
blast T32943 hypothetical protein W01B11.4c - Caenorhabditis elegans 7.0E-23
Sequence
Target Sequence 
>C. ELEGANS:172667_X_AT
aattcaaagttcgtggcaagacccagattgaaaaaaaatcgatgatttccagccctatcc
acgccaacatctacaatatccgcatcaccaagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAAAGTTCGTGGCAAGACCCA 480 173 17 Antisense
CAAAGTTCGTGGCAAGACCCAGATT 235 193 21 Antisense
AAGTTCGTGGCAAGACCCAGATTGA 673 155 23 Antisense
GTTCGTGGCAAGACCCAGATTGAAA 99 443 25 Antisense
GTGGCAAGACCCAGATTGAAAAAAA 429 489 29 Antisense
AAAAATCGATGATTTCCAGCCCTAT 481 129 50 Antisense
TATCCACGCCAACATCTACAATATC 493 657 72 Antisense
CCACGCCAACATCTACAATATCCGC 397 271 75 Antisense
ACGCCAACATCTACAATATCCGCAT 179 89 77 Antisense
CATCTACAATATCCGCATCACCAAG 589 211 84 Antisense
TCTACAATATCCGCATCACCAAGTC 297 613 86 Antisense
Sequence Source Affymetrix Proprietary Database