[Home] | [Total List]

[172666_x_at]

Description W01B11.4C /REP_DB=WormBase Gene ID /WP=CE18309 /TR=O45014 /GB=AAK21477.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 50      6grp_cgc > 98      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 510
1 2 3 4 range
A 20.2
(-3)
A 		263.9
(1.8)
P 		324.9
(3)
P 		57.6
(-2.3)
A 		305
B 44.6
(-2.6)
A 		471.6
(2.6)
M 		507.1
(3)
P 		13.3
(-3)
A 		494
C 71.5
(-2.6)
A 		523.1
(3)
P 		120
(-2)
A 		40.1
(-3)
A 		483
avr 45.4
(-2.9) 		419.5
(3) 		317.3
(1.4) 		37
(-3) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 100.9
(-2.1)
A 		101.3
(-2.1)
A 		113.6
(-1.5)
P 		134.4
(-0.4)
A 		202.1
(3)
P 		83
(-3)
P 		119
B 23.8
(-3)
A 		326.3
(2.8)
P 		117.2
(-1.2)
A 		108
(-1.4)
P 		339.3
(3)
P 		117.8
(-1.2)
P 		316
C 39.5
(-3)
A 		209.5
(0.3)
P 		137.9
(-1.1)
A 		148.2
(-0.9)
A 		344.8
(3)
A 		175.7
(-0.3)
P 		305
avr 54.7
(-3) 		212.4
(0.9) 		122.9
(-1.3) 		130.2
(-1.1) 		295.4
(3) 		125.5
(-1.2) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 7.3
(-3)
A 		57.3
(0.9)
P 		84.9
(3)
P 		8.4
(-2.9)
A 		78
B 14.2
(-2.4)
A 		116.5
(2.9)
M 		117.5
(3)
P 		2.8
(-3)
A 		115
C 23.7
(-2.3)
A 		150.4
(3)
P 		41.8
(-1.5)
A 		6.8
(-3)
A 		144
avr 15.1
(-2.5) 		108.1
(3) 		81.4
(1.4) 		6
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 18.6
(-3)
A 		36
(-0.5)
A 		24.7
(-2.1)
P 		34.1
(-0.8)
A 		61
(3)
P 		20.2
(-2.8)
P 		42
B 8.3
(-3)
A 		108.6
(1.6)
P 		28.5
(-2.1)
A 		28.6
(-2.1)
P 		137.9
(3)
P 		43.9
(-1.4)
P 		130
C 14.6
(-3)
A 		63.9
(0)
P 		35.1
(-1.7)
A 		29.8
(-2.1)
A 		111.6
(3)
A 		58.8
(-0.3)
P 		97
avr 13.8
(-3) 		69.5
(0.7) 		29.4
(-2) 		30.8
(-1.9) 		103.5
(3) 		41
(-1.2) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172666_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.128
Sequence Type Exemplar sequence
Representative Public ID W01B11.4C NCBI
Target Description W01B11.4C /REP_DB=WormBase Gene ID /WP=CE18309 /TR=O45014 /GB=AAK21477.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058736
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W01B11.4a ENSEMBL cdna:known chromosome:CEL140:I:3269478:3271690:-1 gene:W01B11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058736 6/11 Cross Hyb Matching Probes None
SNAP00000027449 6/11 Cross Hyb Matching Probes None
GENEFINDER00000027456 6/11 Cross Hyb Matching Probes None
W01B11.4b 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3269655-3269824(-) 94.83 94.83
Public Domain and Genome References
Ensembl W01B11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32943 hypothetical protein W01B11.4c - Caenorhabditis elegans 1.0E-26
blast T32942 hypothetical protein W01B11.4b - Caenorhabditis elegans 7.0E-23
Sequence
Target Sequence 
>C. ELEGANS:172666_X_AT
atggatctggatgatttccctatccacgccaacatctacaatatccgcatcaccaagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATCTGGATGATTTCCCTATCC 610 51 13 Antisense
TGGATCTGGATGATTTCCCTATCCA 140 551 14 Antisense
GGATCTGGATGATTTCCCTATCCAC 67 513 15 Antisense
GATCTGGATGATTTCCCTATCCACG 97 419 16 Antisense
ATCTGGATGATTTCCCTATCCACGC 113 35 17 Antisense
TATCCACGCCAACATCTACAATATC 494 657 33 Antisense
TCCACGCCAACATCTACAATATCCG 483 589 35 Antisense
CACGCCAACATCTACAATATCCGCA 252 201 37 Antisense
ACGCCAACATCTACAATATCCGCAT 180 89 38 Antisense
CATCTACAATATCCGCATCACCAAG 590 211 45 Antisense
TCTACAATATCCGCATCACCAAGTC 298 613 47 Antisense
Sequence Source Affymetrix Proprietary Database