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[172665_s_at]

Description Y75D11A.1 /REP_DB=WormBase Gene ID /WP=CE18431 /TR=O76706 /GB=AAF36057.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 23
(-0.1)
A 		4.1
(-3)
A 		22.4
(-0.1)
A 		42.6
(3)
A 		39
B 16.7
(-1.9)
A 		36.5
(3)
A 		12.3
(-3)
A 		19.1
(-1.3)
A 		24
C 21.5
(-2)
M 		25.2
(-1.6)
M 		12.1
(-3)
A 		66.4
(3)
P 		54
avr 20.4
(-1.9) 		21.9
(-1.6) 		15.6
(-3) 		42.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 34.7
(3)
A 		0.9
(-3)
A 		18.5
(0.1)
A 		11.1
(-1.2)
A 		29.5
(2.1)
P 		23.2
(1)
A 		34
B 6.8
(-1.4)
A 		4.9
(-1.9)
A 		24
(3)
A 		14
(0.4)
A 		15.9
(0.9)
A 		0.7
(-3)
A 		23
C 1
(-3)
A 		22.8
(3)
P 		0.9
(-3)
A 		17.9
(1.7)
A 		2.4
(-2.6)
A 		14.7
(0.8)
A 		22
avr 14.2
(1.4) 		9.5
(-3) 		14.5
(1.7) 		14.3
(1.5) 		15.9
(3) 		12.9
(0.2) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.4
(3)
A 		0.9
(-3)
A 		5.9
(1)
A 		6.2
(1.2)
A 		8
B 5.3
(-0.6)
A 		9
(3)
A 		2.8
(-3)
A 		4.1
(-1.7)
A 		6
C 7.1
(-0.5)
M 		7.2
(-0.4)
M 		4.2
(-3)
A 		11.2
(3)
P 		7
avr 6.9
(2.4) 		5.7
(-0.1) 		4.3
(-3) 		7.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.4
(1.3)
A 		0.3
(-3)
A 		4
(-0.4)
A 		2.8
(-1.3)
A 		8.9
(3)
P 		5.7
(0.8)
A 		9
B 2.4
(-1)
A 		1.6
(-1.7)
A 		5.8
(2.3)
A 		3.7
(0.3)
A 		6.5
(3)
A 		0.3
(-3)
A 		6
C 0.4
(-2.8)
A 		6.9
(3)
P 		0.2
(-3)
A 		3.6
(0)
A 		0.8
(-2.5)
A 		4.9
(1.2)
A 		7
avr 3.1
(-2.5) 		2.9
(-3) 		3.3
(-2) 		3.4
(-1.8) 		5.4
(3) 		3.6
(-1.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172665_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18595
Sequence Type Exemplar sequence
Representative Public ID Y75D11A.1 NCBI
Target Description Y75D11A.1 /REP_DB=WormBase Gene ID /WP=CE18431 /TR=O76706 /GB=AAF36057.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075921(11), NM_072839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075921 NCBI Caenorhabditis elegans Y75D11A.1 (Y75D11A.1) mRNA, complete cds. 11/11 None
NM_072839 NCBI Caenorhabditis elegans ZC190.9 (ZC190.9) mRNA, complete cds. 11/11 None
ZC190.9 ENSEMBL cdna:known chromosome:CEL140:V:8694786:8696160:-1 gene:ZC190.9 11/11 None
Y75D11A.1 ENSEMBL cdna:known chromosome:CEL140:X:1756412:1757783:1 gene:Y75D11A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000643 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7471840-7473155(+) 100.0 100.0
chrX:1756411-1757783(+) 100.0 100.0
chrIV:64399-65767(-) 100.0 100.0
chrV:8694786-8696161(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl ZC190.9
Y75D11A.1
Entrez Gene 190721 Entrez gene
191098 Entrez gene
SwissProt O76706 EMBL-EBI
WormBase CE18431 Wormbase
CE18431 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26962 Hypothetical protein ZC190.9 [Caenorhabditis elegans] gb|AAF36057.1| Hypothetical protein Y75D11A.1 [Caenorhabditis elegans] ref|NP_505240.1| ZC190.9 [Caenorhabditis elegans] ref|NP_508322.1| Y75D11A.1 [Caenorhabditis elegans] 8.0E-35
Sequence
Target Sequence 
>C. ELEGANS:172665_S_AT
aaacgtagagtaggcgattcggaatctgtggatcaccaaggacagcagaaattcttctac
caacttgatgaaccggagtacaacaacttcacaaaacgattggatcgcttcgatgaccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGTAGAGTAGGCGATTCGGAAT 442 125 79 Antisense
GCGATTCGGAATCTGTGGATCACCA 470 291 92 Antisense
CGGAATCTGTGGATCACCAAGGACA 474 241 98 Antisense
GTGGATCACCAAGGACAGCAGAAAT 108 491 106 Antisense
GGACAGCAGAAATTCTTCTACCAAC 236 525 118 Antisense
GAAATTCTTCTACCAACTTGATGAA 681 363 126 Antisense
TCTTCTACCAACTTGATGAACCGGA 617 615 131 Antisense
CTACCAACTTGATGAACCGGAGTAC 224 23 135 Antisense
GAACCGGAGTACAACAACTTCACAA 119 347 148 Antisense
CAACTTCACAAAACGATTGGATCGC 203 189 162 Antisense
ACGATTGGATCGCTTCGATGACCGT 109 95 174 Antisense
Sequence Source Affymetrix Proprietary Database