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[172664_x_at]

Description Y57G11C.18 /REP_DB=WormBase Gene ID /WP=CE14960 /TR=O18242 /GB=CAB16519.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 26.3
(0.8)
A
35.8
(3)
A
9.6
(-3)
A
35.8
(3)
A
26
B 8
(-3)
A
39.3
(1.4)
A
37.4
(1.1)
A
50.8
(3)
A
43
C 6.1
(-2.9)
A
16.4
(-2.5)
A
4.8
(-3)
A
145.4
(3)
P
141
avr 13.5
(-3)
30.5
(-1.4)
17.3
(-2.6)
77.3
(3)
64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 8.7
(-2.4)
A
7.8
(-2.6)
A
10.5
(-2)
A
34.5
(3)
A
6.6
(-2.8)
A
5.8
(-3)
A
29
B 24
(2.3)
A
19.7
(1.3)
A
1.9
(-3)
A
26.9
(3)
A
15.2
(0.2)
A
8.3
(-1.5)
A
25
C 6.5
(-3)
A
59.9
(3)
A
41.6
(0.9)
A
56.3
(2.6)
A
8.4
(-2.8)
A
12.3
(-2.3)
A
53
avr 13.1
(-2.2)
29.1
(1)
18
(-1.2)
39.2
(3)
10.1
(-2.7)
8.8
(-3)
30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 9.6
(3)
A
7.8
(1.5)
A
2.5
(-3)
A
5.2
(-0.7)
A
7
B 2.5
(-3)
A
9.7
(2.2)
A
8.7
(1.5)
A
10.8
(3)
A
8
C 2
(-2.9)
A
4.7
(-2.2)
A
1.7
(-3)
A
24.5
(3)
P
23
avr 4.7
(-2.7)
7.4
(-1)
4.3
(-3)
13.5
(3)
9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.6
(-2.8)
A
2.8
(-1.9)
A
2.3
(-2.3)
A
8.8
(3)
A
2
(-2.5)
A
1.4
(-3)
A
7
B 8.4
(3)
A
6.5
(1.6)
A
0.5
(-3)
A
7.1
(2)
A
6.2
(1.3)
A
3.1
(-1)
A
8
C 2.4
(-3)
A
18.3
(3)
A
10.6
(0.1)
A
11.3
(0.4)
A
2.7
(-2.9)
A
4.1
(-2.4)
A
16
avr 4.1
(-1.9)
9.2
(3)
4.5
(-1.5)
9.1
(2.9)
3.6
(-2.3)
2.9
(-3)
6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172664_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9308
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.18 NCBI
Target Description Y57G11C.18 /REP_DB=WormBase Gene ID /WP=CE14960 /TR=O18242 /GB=CAB16519.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070397(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_070397 NCBI Caenorhabditis elegans Y57G11C.18 (Y57G11C.18) mRNA, complete cds. 11/11 None
SNAP00000003492 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14840272:14841393:-1 11/11 None
GENEFINDER00000003616 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14839181:14842574:-1 11/11 None
Y57G11C.18 ENSEMBL cdna:known chromosome:CEL140:IV:14840272:14841417:-1 gene:Y57G11C.18 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066333 5/11 Cross Hyb Matching Probes A 
GENEFINDER00000009243 2/11 Cross Hyb Matching Probes None
GENEFINDER00000022469 6/11 Cross Hyb Matching Probes None
SNAP00000022458 6/11 Cross Hyb Matching Probes None
F54H12.4 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7961517-7962663(-) 97.87 97.87
chrIV:14840277-14841423(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.18
Entrez Gene 190375 Entrez gene
SwissProt O18242 EMBL-EBI
WormBase CE14960 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16519 Hypothetical protein Y57G11C.18 [Caenorhabditis elegans] ref|NP_502798.1| Y57G11C.18 [Caenorhabditis elegans] 0.0
blast CAB16520 Hypothetical protein Y57G11C.19 [Caenorhabditis elegans] ref|NP_502797.1| Y57G11C.19 [Caenorhabditis elegans] 0.0
blast AAA28053 Hypothetical protein F54H12.4 [Caenorhabditis elegans] ref|NP_498734.1| F54H12.4 [Caenorhabditis elegans] sp|P34458|YMD4_CAEEL Hypothetical protein F54H12.4 in chromosome III 1.0E-180
blast CAB16519 Hypothetical protein Y57G11C.18 [Caenorhabditis elegans] ref|NP_502798.1| Y57G11C.18 [Caenorhabditis elegans] 1.0E-175
blast AAA28053 Hypothetical protein F54H12.4 [Caenorhabditis elegans] ref|NP_498734.1| F54H12.4 [Caenorhabditis elegans] sp|P34458|YMD4_CAEEL Hypothetical protein F54H12.4 in chromosome III 1.0E-167
blast CAB16519 Hypothetical protein Y57G11C.18 [Caenorhabditis elegans] ref|NP_502798.1| Y57G11C.18 [Caenorhabditis elegans] 1.0E-159
blast AAA28053 Hypothetical protein F54H12.4 [Caenorhabditis elegans] ref|NP_498734.1| F54H12.4 [Caenorhabditis elegans] sp|P34458|YMD4_CAEEL Hypothetical protein F54H12.4 in chromosome III 1.0E-151
blast T32093 hypothetical protein K09F6.1 - Caenorhabditis elegans 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.2E-22
Sequence
Target Sequence
>C. ELEGANS:172664_X_AT
tatggaaccccaaaaacatgcacccggaaaaataaaaaagtccaagaaacaaaagaaaga
cggaactctcagtagacctttgggtaaaaaggaaaagaagagtgtgcaatacgccacttc
aaacaagaggcaaaagtttgatctcaagagaggaaagagcatgaataacgtgaaaccgcg
aaaactttataaattgcagctggatgaggaagatgaagatgaagagccgatggttgatga
gacgccacaaaacactgagatttccattaaaaaaagaccatttcaacaggattccacaaa
aaacttaaacaagaggcagaaatttgatttgaaaagaagaaagaatatgagtagagtgag
gccaaacaaaatttataagatgcaaaacttgaaacgcaacatttcttcaaccatcccaga
taatggtacaaatatccctgctgccaaaaggcgcgttcttcacggatctggttcagctcc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TATGGAACCCCAAAAACATGCACCC 14 647 522 Antisense
GACGGAACTCTCAGTAGACCTTTGG 197 375 580 Antisense
GAGTGTGCAATACGCCACTTCAAAC 596 401 621 Antisense
GAGCCGATGGTTGATGAGACGCCAC 311 385 745 Antisense
GACGCCACAAAACACTGAGATTTCC 91 381 762 Antisense
AAGACCATTTCAACAGGATTCCACA 613 153 795 Antisense
GAAACGCAACATTTCTTCAACCATC 133 359 912 Antisense
ATTTCTTCAACCATCCCAGATAATG 457 15 922 Antisense
ATGGTACAAATATCCCTGCTGCCAA 572 51 944 Antisense
GCTGCCAAAAGGCGCGTTCTTCACG 2 297 961 Antisense
TTCTTCACGGATCTGGTTCAGCTCC 195 689 977 Antisense
Sequence Source Affymetrix Proprietary Database