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[172663_x_at]

Description Y57G11C.20 /REP_DB=WormBase Gene ID /WP=CE14964 /TR=O18244 /GB=CAB16521.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 85
(3)
P 		21.8
(-3)
A 		22.1
(-3)
A 		57.8
(0.4)
P 		63
B 57.4
(2.3)
P 		58.7
(2.4)
P 		2.5
(-3)
A 		64.5
(3)
P 		62
C 94.6
(3)
P 		41.5
(-1.4)
A 		22.9
(-3)
A 		51.5
(-0.6)
P 		72
avr 79
(3) 		40.7
(-0.6) 		15.8
(-3) 		57.9
(1) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 105
(1.6)
P 		127
(3)
P 		39.9
(-2.4)
P 		29.8
(-3)
A 		42.2
(-2.2)
M 		50.4
(-1.7)
P 		97
B 104.8
(3)
P 		51.3
(-1.2)
P 		63.7
(-0.2)
P 		81.1
(1.2)
P 		27.7
(-3)
A 		53.8
(-1)
P 		77
C 62.7
(-1)
P 		142.2
(3)
P 		51.4
(-1.5)
A 		34.4
(-2.4)
A 		22.3
(-3)
A 		57.3
(-1.2)
P 		120
avr 90.8
(1.7) 		106.8
(3) 		51.7
(-1.3) 		48.4
(-1.6) 		30.7
(-3) 		53.8
(-1.2) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 30.9
(3)
P 		4.7
(-3)
A 		5.8
(-2.7)
A 		8.5
(-2.1)
P 		26
B 18.3
(3)
P 		14.5
(1.7)
P 		0.6
(-3)
A 		13.8
(1.5)
P 		18
C 31.3
(3)
P 		11.9
(-2)
A 		8
(-3)
A 		8.7
(-2.8)
P 		23
avr 26.8
(3) 		10.4
(-1.5) 		4.8
(-3) 		10.3
(-1.5) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 19.4
(-1.1)
P 		45.2
(3)
P 		8.7
(-2.8)
P 		7.6
(-3)
A 		12.7
(-2.2)
M 		12.3
(-2.3)
P 		38
B 36.5
(3)
P 		17.1
(-1.6)
P 		15.5
(-2)
P 		21.5
(-0.6)
P 		11.3
(-3)
A 		20.1
(-0.9)
P 		25
C 23.3
(-0.3)
P 		43.4
(3)
P 		13.1
(-2)
A 		6.9
(-3)
A 		7.2
(-3)
A 		19.2
(-1)
P 		37
avr 26.4
(0.9) 		35.2
(3) 		12.4
(-2.5) 		12
(-2.6) 		10.4
(-3) 		17.2
(-1.4) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172663_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8963
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.20 NCBI
Target Description Y57G11C.20 /REP_DB=WormBase Gene ID /WP=CE14964 /TR=O18244 /GB=CAB16521.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070398(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070398 NCBI Caenorhabditis elegans Y57G11C.20 (Y57G11C.20) mRNA, complete cds. 11/11 None
SNAP00000003495 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14843324:14845273:1 11/11 None
GENEFINDER00000003577 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14843324:14845273:1 11/11 None
Y57G11C.20 ENSEMBL cdna:known chromosome:CEL140:IV:14843324:14845273:1 gene:Y57G11C.20 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170976 6/11 Cross Hyb Matching Probes None
SNAP00000009223 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009238 2/11 Cross Hyb Matching Probes None
K09F6.9 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14843329-14845279(+) 100.0 100.0
chrII:2280645-2282699(-) 92.05 92.05
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.20
Entrez Gene 353433 Entrez gene
SwissProt O18244 EMBL-EBI
WormBase CE14964 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16521 Hypothetical protein Y57G11C.20 [Caenorhabditis elegans] ref|NP_502799.1| Y57G11C.20 [Caenorhabditis elegans] 0.0
blast AAM97999 Hypothetical protein K09F6.9 [Caenorhabditis elegans] ref|NP_740973.1| K09F6.9 [Caenorhabditis elegans] 1.0E-165
Sequence
Target Sequence 
>C. ELEGANS:172663_X_AT
agcagttcgagcatcttcagagtaccatgatgttgctttgaaaatttttcaaaaacccaa
tgatagaaacatttatgatgaattgaaactatcctttgagcgaatccgatcaaggataaa
agtttcgcactttgaaaactcttcagactatctgcaatttggagaaaaggacggaagagt
ttccattgattttttagattcaaacattttatttgaggaatttgaaaagtcttgtgcata
ttttctcggatttcacgatacaattgttagagaatccagcttggcacctagcaaaattga
ttatttcggtaacgttagcacaatctatctttattgtgatattgtagaccctataatcgt
gggagattctaaaaattcgctactgtctgtaattccctgtaaaggaaaatatggtgaaat
gattcatcatactattcctcacccccgttatcttcctattatgaatagcactatagattc
cataaagattgaattgttgtctgaatttgccgaaccaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGTTCGAGCATCTTCAGAGTAC 59 79 1392 Antisense
GAAACTATCCTTTGAGCGAATCCGA 342 357 1476 Antisense
AGTTTCGCACTTTGAAAACTCTTCA 514 61 1512 Antisense
AAGTCTTGTGCATATTTTCTCGGAT 688 157 1618 Antisense
TAGAGAATCCAGCTTGGCACCTAGC 95 653 1659 Antisense
TGATTATTTCGGTAACGTTAGCACA 7 481 1689 Antisense
AACGTTAGCACAATCTATCTTTATT 76 145 1702 Antisense
AATTCGCTACTGTCTGTAATTCCCT 683 177 1765 Antisense
TGATTCATCATACTATTCCTCACCC 55 565 1811 Antisense
CCCCCGTTATCTTCCTATTATGAAT 526 261 1833 Antisense
GTTGTCTGAATTTGCCGAACCAATA 415 437 1887 Antisense
Sequence Source Affymetrix Proprietary Database