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[172662_x_at]

Description Y57G11C.21 /REP_DB=WormBase Gene ID /WP=CE14966 /TR=O18245 /GB=CAB16522.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 69.2
(3)
A 		33.1
(-0.5)
A 		7.3
(-3)
A 		49.4
(1.1)
P 		62
B 54.1
(1.1)
A 		29.3
(-2.3)
A 		24.3
(-3)
A 		67.8
(3)
P 		44
C 34.4
(-1.6)
A 		8.8
(-3)
A 		26.7
(-2)
A 		120.9
(3)
P 		112
avr 52.6
(0.3) 		23.7
(-2.6) 		19.4
(-3) 		79.4
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 78.8
(3)
A 		47.8
(0.6)
A 		15.9
(-1.9)
A 		4.9
(-2.8)
A 		2.3
(-3)
A 		9.5
(-2.4)
A 		77
B 35.8
(-0.5)
A 		47.7
(1.6)
A 		56.1
(3)
A 		34.2
(-0.7)
A 		20.8
(-3)
A 		47.9
(1.6)
P 		35
C 23.3
(-1.3)
A 		28.8
(0.3)
A 		34.6
(1.9)
A 		38.3
(3)
A 		17.4
(-3)
A 		33.7
(1.7)
P 		21
avr 46
(3) 		41.4
(2.2) 		35.5
(1.1) 		25.8
(-0.7) 		13.5
(-3) 		30.4
(0.1) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 25.2
(3)
A 		7.2
(-1.6)
A 		1.9
(-3)
A 		7.2
(-1.6)
P 		23
B 17.2
(3)
A 		7.2
(-2.2)
A 		5.6
(-3)
A 		14.5
(1.6)
P 		12
C 11.4
(-0)
A 		2.5
(-3)
A 		9.3
(-0.7)
A 		20.4
(3)
P 		18
avr 17.9
(3) 		5.6
(-3) 		5.6
(-3) 		14
(1.1) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 14.5
(2.1)
A 		17
(3)
A 		3.5
(-2)
A 		1.2
(-2.8)
A 		0.7
(-3)
A 		2.3
(-2.4)
A 		16
B 12.5
(-0.4)
A 		15.9
(1.7)
A 		13.6
(0.3)
A 		9
(-2.7)
A 		8.5
(-3)
A 		17.9
(3)
P 		9
C 8.6
(0.2)
A 		8.8
(0.4)
A 		8.8
(0.4)
A 		7.7
(-0.8)
A 		5.6
(-3)
A 		11.3
(3)
P 		6
avr 11.9
(1.7) 		13.9
(3) 		8.6
(-0.5) 		6
(-2.3) 		4.9
(-3) 		10.5
(0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172662_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8996
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.21 NCBI
Target Description Y57G11C.21 /REP_DB=WormBase Gene ID /WP=CE14966 /TR=O18245 /GB=CAB16522.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070399 NCBI Caenorhabditis elegans Y57G11C.21 (Y57G11C.21) mRNA, complete cds. 11/11 None
SNAP00000003497 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14846410:14851172:1 11/11 None
GENEFINDER00000003608 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14846410:14853566:1 11/11 None
Y57G11C.21 ENSEMBL cdna:known chromosome:CEL140:IV:14846347:14847057:1 gene:Y57G11C.21 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066334 3/11 Cross Hyb Matching Probes A 
NM_061823 3/11 Cross Hyb Matching Probes A 
SNAP00000009218 3/11 Cross Hyb Matching Probes None
GENEFINDER00000009237 3/11 Cross Hyb Matching Probes None
SNAP00000022459 2/11 Cross Hyb Matching Probes None
GENEFINDER00000022470 3/11 Cross Hyb Matching Probes None
K09F6.5 3/11 Cross Hyb Matching Probes A 
F54H12.2 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7964489-7965139(+) 88.61 88.61
chrIV:14846352-14847063(+) 100.0 100.0
chrII:2272684-2273384(-) 92.41 92.41
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.21
Entrez Gene 353434 Entrez gene
SwissProt O18245 EMBL-EBI
WormBase CE14966 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16523 Hypothetical protein Y57G11C.22 [Caenorhabditis elegans] ref|NP_502796.1| Y57G11C.22 [Caenorhabditis elegans] 0.0
blast CAE73898 Hypothetical protein CBG21499 [Caenorhabditis briggsae] 0.0
blast CAB16523 Hypothetical protein Y57G11C.22 [Caenorhabditis elegans] ref|NP_502796.1| Y57G11C.22 [Caenorhabditis elegans] 1.0E-144
blast CAE73898 Hypothetical protein CBG21499 [Caenorhabditis briggsae] 1.0E-142
blast CAB16522 Hypothetical protein Y57G11C.21 [Caenorhabditis elegans] ref|NP_502800.1| Y57G11C.21 [Caenorhabditis elegans] 1.0E-135
blast AAB66195 Hypothetical protein K09F6.5 [Caenorhabditis elegans] ref|NP_494224.1| K09F6.5 [Caenorhabditis elegans] 1.0E-131
blast AAK84536 Hypothetical protein F54H12.2 [Caenorhabditis elegans] ref|NP_498735.1| F54H12.2 [Caenorhabditis elegans] sp|P34456|YMD2_CAEEL Hypothetical protein F54H12.2 in chromosome III 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 8.2E-6
Pfam IPR010504 EMBL-EBI Arfaptin-like 6.3E-88
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 8.2E-6
Pfam IPR010504 EMBL-EBI Arfaptin-like 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:172662_X_AT
aatgcgtttcaagccgaaggtccttgggagtttgtactgggcaacaattcaagatcctac
cttaacctcaagcgaacctatctagtctatacctttaatattaccgatcaaaatggtgct
attgtgactatacctaatcccatcactaaagatagtttggtttacgccccaatcaacaat
atagcacactctattgttaaaaacttttctcttcacatcaactcccaactggcttatcat
aacttttcaaactatgcttacaaggcatattttgagaatgcactaatgtatggaaaagaa
attaaaaactctactctcactgcggcaggatatttccacgaagatgaaattggctctccg
gcaagtaagggattccttaatcgctgcggtaccggaacaacgcaagttgccgcaaacatt
tctctcgatttgatgaaccaaccacgggttttgctaaattcgtgtaatgtgaaactgacg
gcataccctaacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCGTTTCAAGCCGAAGGTCCTT 485 165 133 Antisense
TTCAAGATCCTACCTTAACCTCAAG 264 685 180 Antisense
AACCTCAAGCGAACCTATCTAGTCT 27 147 196 Antisense
GGTGCTATTGTGACTATACCTAATC 223 501 247 Antisense
GATAGTTTGGTTTACGCCCCAATCA 277 421 283 Antisense
TAAAAACTTTTCTCTTCACATCAAC 310 639 330 Antisense
ACATCAACTCCCAACTGGCTTATCA 90 105 347 Antisense
AATTAAAAACTCTACTCTCACTGCG 643 175 432 Antisense
TTCCTTAATCGCTGCGGTACCGGAA 470 557 505 Antisense
CAAGTTGCCGCAAACATTTCTCTCG 343 185 535 Antisense
GAAACTGACGGCATACCCTAACAAT 671 355 603 Antisense
Sequence Source Affymetrix Proprietary Database